Nitrosococcus halophilus: Nhal_3719
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Entry
Nhal_3719 CDS
T01198
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
nhl
Nitrosococcus halophilus
Pathway
nhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nhal_3719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nhl03019
]
Nhal_3719
Enzymes [BR:
nhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Nhal_3719
Messenger RNA biogenesis [BR:
nhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nhal_3719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADE16739
UniProt:
D5C2R4
LinkDB
All DBs
Position
complement(3833858..3835129)
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AA seq
423 aa
AA seq
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MSNPHFSEISFDALNLAKPLIQGIQDAGFTVCTPIQALTLPLLLAGKDVAGQAQTGTGKT
AAFLLATMQYLLRDLGIEQGQQPRALILAPTRELAIQIKKDAQLLGRHTGLRSVVVYGGA
NYRKQRHLLEQGCDILIGTPGRLIDYYKQQIFDFKKVQVVVLDEADRMFDLGFIRDIRYI
LRRLPPPHKRLGMLFSATLSLRVTELAYEHMNNPRLVQTESQKVTADKIKERVYFPANEE
KIPLLLALLKRLAPQHAIVFVNTKYAAEQVWGYLEGNGFKAALLSGDVPQGKRQRLLKEF
QEGSYPILVATDVAARGLHIPTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAVSFACE
DYAFSLPDIEEYIGHKLAPFSVDDEALSIPKQPISLPPRDNRNLRKGGHRSRQKKKDSRK
GGV
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcctcatttttctgaaatttcatttgatgccttaaatctggccaaaccccta
atacaggggattcaagatgccggttttaccgtttgtacgccgatccaggcattgacattg
cctttgctactggccggtaaggatgtagcggggcaggcccagacggggaccggcaagacg
gctgcctttttgctggcgacaatgcaatacttattaagagatcttggtattgaacaaggt
caacagccccgggcgttaattctagccccaactcgtgagttggctattcagataaaaaag
gatgcccaactgctcggccgtcataccggtttacgatctgttgttgtttatggtggggct
aattaccgcaaacaacgccacctcctagagcaaggctgtgatatcttgattggtacacca
ggacgtctcattgattattacaaacagcagatattcgattttaaaaaagtccaggtcgtc
gttttagacgaggccgatcggatgtttgatctgggctttattcgggacattcgctacatt
ttgcgtcgtctgccgccaccccataaacgcctcgggatgttgttttcagccaccctttcc
ctgcgggtgacggagctagcttacgagcatatgaacaacccccgtctagtccaaacagag
tcccagaaggtaaccgccgataaaattaaagaaagagtttattttcctgctaacgaagaa
aaaattcctctattgcttgccctccttaaacgtctagcgccccaacatgcgattgtgttt
gtgaatactaaatacgccgctgaacaagtctggggttacctggaaggtaatggctttaaa
gctgccttgctttccggtgacgtcccccagggcaagcgtcagcgcctgcttaaggaattc
caagagggaagttatcctattttggttgccacggatgtggcggcacggggtcttcatatc
cctacggtaactcatgtatttaactatgatttacctcaggatcctgaagactatgtgcat
cgtataggccggactgctcgcgctggagcgagtggttcggcggtgagttttgcctgtgaa
gattacgccttttccttgcctgatattgaggaatatattggtcataagttggctcctttc
tcggtagatgatgaggcactgtccataccgaaacaacccatctcgctaccgcctagggac
aacaggaatcttcgcaagggggggcatcgttcccgccaaaaaaagaaggattcccggaag
gggggtgtttag
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