Nitrosococcus halophilus: Nhal_3769
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Entry
Nhal_3769 CDS
T01198
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
nhl
Nitrosococcus halophilus
Pathway
nhl03420
Nucleotide excision repair
nhl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Nhal_3769
03430 Mismatch repair
Nhal_3769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhl03400
]
Nhal_3769
Enzymes [BR:
nhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Nhal_3769
DNA repair and recombination proteins [BR:
nhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Nhal_3769
MMR (mismatch excision repair)
Other MMR factors
Nhal_3769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ADE16785
UniProt:
D5C2W0
LinkDB
All DBs
Position
3882036..3884183
Genome browser
AA seq
715 aa
AA seq
DB search
MDISYLLNPLNKAQREAVAAPAGHHLVLAGAGSGKTRVLVHRIAWLIRSQGISPFSLLAV
TFTNKAAGEMRGRIEELLGMPAGGMWMGTFHGLAHRLLRTHWQEAQLPQDFQILDSEDQY
RLIRRILQNLNLDETRWPPRQAQWFINGRKDEGLRPQHLEDDGNPYLRQQIRIYHSYQSH
CERSGLVDFAELLLRAHELWRDHPALLGHYQNRFTHILVDEFQDTNAIQYAWLRLLAGNQ
GKLFIVGDDDQSIYGWRGARIENIQQLTQDFPTVRTVRLEQNYRSTGTILAAANTVIAHN
AQRLGKNLWTDGEEGEPIQIYRAFNERDEAHFVVERIQAWQNQGERRADIAVLYRSNAQS
RILEAALVEAGIPYRVHGGLRFFERAEIKDALAYLRLVAHQNDDSAFERVVNTPPRGIGE
RTLSQVREQARQAGLSLWQAATQLINTRTLSPRSANALQKFHRLIEGMATAIKALTLPEK
MELVLEQSGLFDHYRKDRSEKGQSRLDNLKELINAASQFKAEDPSLETLPEFLAHAALEA
GDTQAEDREDCVQLMTLHAAKGLEFPLVFIVGMEEGLFPSPQSLNEPRRLEEERRLCYVG
MTRARYHLYLIHAEHRWLYGSESYPKPSRFLYEIPTELTHELRPQTHIIRPGYAPQEPMA
SDGGLQRGQRVKHPKFGEGVILGLEGKGEHRRVQVNFNQAGTKWLAVTYANLQIV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggatatttcctatttgctcaatccgcttaacaaagcccagcgtgaggcggtcgccgcc
cccgcaggacatcatttagtgctcgccggtgcaggcagcggtaaaacccgggtattggta
catcgaattgcttggctgatccgaagccaaggaatctctccttttagtctcttggcagtg
acttttaccaataaggctgccggggaaatgcgagggcgaatcgaagagttactaggaatg
ccggcggggggtatgtggatgggcacctttcatggactggcccatcgcctgttacggacc
cattggcaagaggcccagctcccccaggactttcagattctggattcggaggatcagtac
cgtctaattcgtcggatcttgcagaatctcaacctagatgaaacccggtggccaccacgc
caggcccaatggtttatcaacggccgtaaggacgagggcctgcgcccccagcatcttgag
gatgacggtaacccctatctccggcaacagatccgcatctaccacagctatcagagccac
tgcgaacgcagcggcttggtggacttcgcggagcttttgctgcgggctcatgaactgtgg
cgagaccatcccgccctactgggacactaccaaaaccgttttactcatattttggtggat
gaattccaggataccaatgccatccaatatgcttggctacgattgctggccgggaaccag
ggaaaactctttatcgtcggcgatgacgatcaatccatctatggctggcggggggcacgg
attgaaaatattcaacaactgacccaggactttcccaccgtacggacagtgcgcttggaa
caaaactaccgctcaacgggcactatcctcgccgcggctaacacggtcattgcccacaat
gcacaacggctggggaaaaacctttggaccgatggcgaagagggcgagcccattcaaatc
taccgggcctttaatgaacgggacgaggcccattttgtggtcgagcgtatccaagcctgg
caaaaccaaggggaaaggcgcgctgatatcgccgtactctaccgctccaacgcccaatcc
cggatcctagaggcggccctggtggaggccggcatcccctatcgggtccatgggggactg
cggttcttcgagcgggcggaaattaaagatgccctggcttatttgcgtctagtggcccat
caaaacgatgactctgccttcgagcgggtggtgaatactccccctcgcggcattggcgaa
cgaaccctttcccaagtcagggaacaagcccgccaggccggcctctccctgtggcaagcg
gcaacccaattgatcaacacgcggaccctctcccctcgaagcgccaatgccctccaaaaa
tttcaccgacttatcgaaggcatggcgacagccatcaaggcccttaccctcccggaaaaa
atggagcttgtgcttgaacaaagtggtttgtttgaccactaccgcaaagaccgtagcgaa
aaaggccaatcacgcttagataacctgaaagagctgattaatgccgcctcccaatttaaa
gccgaagatcctagcctggaaacgttaccagaatttttagcccatgcggcactggaggca
ggggatacccaggccgaggatcgggaggattgcgtgcaattgatgactttacacgcggcg
aagggcctggaattcccccttgtatttatcgtcggcatggaagaaggcctatttccaagc
ccccaatccctcaatgagcccaggcggctggaggaggaacgtcgactctgctatgtggga
atgacccgggctcgatatcatctctatctcattcatgcagagcatcgttggctttatggt
tcggagagctaccccaaaccttcccgttttctttatgaaattcccaccgaactcacccat
gaactccggccgcaaacccatattatccgtcccggttatgctccccaagaacccatggcc
tctgatggaggcttgcaacggggtcaacgagtcaagcaccctaagtttggagagggggtg
atcctaggcttggaaggaaaaggcgagcataggcgggtgcaagtcaatttcaaccaagca
gggactaaatggctggcagtgacctatgccaatctccaaattgtttga
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