Natronomonas halophila: HWV23_00910
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Entry
HWV23_00910 CDS
T07279
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nho
Natronomonas halophila
Pathway
nho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HWV23_00910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nho03019
]
HWV23_00910
Messenger RNA biogenesis [BR:
nho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HWV23_00910
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
QLD84324
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All DBs
Position
194936..196276
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AA seq
446 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDVVVFDMGLNLSKVLIHDNVETERMHSLDLIDMGA
IPDDRVMSELEGDVQAIVPTHGHLDHIGAISKLAHRYDAPIVATPFTIELVKQQIEGEEK
FGVQNDLVKMDPGGTMSIGDDCELEFVNVTHSIIDAINPVLHTPEGAVVYGLDKRMDHNP
VLGDPIDMDRFREIGREGVLAYIEDCTNAGKKGKTPSESVAREQLKDVMYSVQDYEGGIV
ATTFSSHIARVKSLVEFADDIGRQPVLLGRSMEKYSGTAERLDFVDFPDDLGMYGHRKSV
DRTFKRIMEEGKENYLPIVTGHQGEPRAMLTRMARGETPYELDKGDKVIFSARVIPEPTN
EGQRYQAEKLLGMQGARIYDDIHVSGHLNTEGHYEMLQALNPENVIPAHQSMEGFAPYVD
LARNEGYQLGRDLHVTENGNIIQLTE
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaatcgcaaccattggcggatacgaggaagtcggccggcagatgactgcc
gtccgcgccggcgacgacgtcgtcgtcttcgacatggggctgaacctgtcgaaggtcctc
attcacgacaacgtagagaccgaacgaatgcacagtctggacctcatcgacatgggggcc
attccggacgaccgcgtcatgtccgaactcgaaggtgacgtgcaggccatcgtgcccacg
cacggccacctcgaccacatcggcgccatctcgaaacttgcacaccgctacgatgccccc
atcgtcgcgacgccctttaccatcgaactcgtcaaacagcagatcgagggcgaagagaaa
ttcggcgtccagaacgacctcgtgaagatggaccccggcggcacgatgtccatcggtgac
gactgcgaactcgagttcgtcaacgtcacccactccatcatcgacgccatcaacccggtc
ctccacacgcccgagggcgccgtcgtctacggcctcgacaagcggatggaccacaacccg
gtgctgggcgaccccatcgacatggaccggttccgcgaaatcggtcgcgagggcgtgctc
gcctacatcgaggactgtaccaacgccggcaagaagggcaagacgccctccgagtccgtc
gcccgcgaacaactgaaagacgtgatgtactcggtgcaggattacgagggtggcatcgtc
gccaccacgttctccagccacatcgcgcgtgtcaagagcctcgtcgagttcgccgacgat
atcggccgccagcccgttctgctgggccgctcgatggagaagtacagtggtactgccgaa
cgactggacttcgtcgacttccccgatgacctcgggatgtacggccaccgcaagtcggtc
gaccgcaccttcaagcggattatggaagagggcaaggagaactacctccccatcgtcacc
ggccaccagggcgaaccccgcgcgatgctgacccggatggcccgcggcgagacgccctac
gaactggacaagggcgacaaggtcatcttcagtgcccgtgtcatccccgaaccgaccaac
gagggccagcgctaccaggccgagaagcttctgggtatgcagggcgcccgcatctacgac
gacatccacgtctccggccacctgaacacggaaggccactacgagatgctgcaggccctc
aaccccgagaacgtcatcccggcccaccagtcgatggaaggcttcgcgccgtacgtcgac
ctcgcgcggaacgagggctaccagctcggtcgtgacctccacgtcacggagaacggcaac
atcatccagctgacggaatga
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