Natronomonas halophila: HWV23_08560
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Entry
HWV23_08560 CDS
T07279
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
nho
Natronomonas halophila
Pathway
nho03022
Basal transcription factors
nho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nho00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HWV23_08560
09124 Replication and repair
03420 Nucleotide excision repair
HWV23_08560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nho03021
]
HWV23_08560
03400 DNA repair and recombination proteins [BR:
nho03400
]
HWV23_08560
Enzymes [BR:
nho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HWV23_08560
Transcription machinery [BR:
nho03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HWV23_08560
DNA repair and recombination proteins [BR:
nho03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HWV23_08560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
AAA_34
Motif
Other DBs
NCBI-ProteinID:
QLD85770
LinkDB
All DBs
Position
complement(1562977..1565151)
Genome browser
AA seq
724 aa
AA seq
DB search
MSESSGHARFFPYDEPYDHQEDAMGNIREALVEERDVLFEGACGTGKTLASLVPALEYGR
AAGKTVVITTNVHQQTRQFIEEARAINDQEPIRSVVFRGKVSMCHIDVGYEECQALRDTT
RDLVDKEQDLAELEDREGELLDASKDGNGEAAQARGSVMDEIDDIEASIEALQEERNICD
RYYNNLTGETDEFYQWLYEDVRTPDEIYERAHAMDFCGYELLKDGIEGVDLVICNYHHLL
DPMIREQFFRWLGREPEDIIVVFDEAHNVAGAARDHATRKLAEQTLEGAMDELEECDDAR
AEPAANVIGTFRDALVETYEDSFGFGEREAVGEDWEDVPIDNEEGRDDLSVSFLQNYTGQ
GFSTDLEQALALGEELDRRYEQAYKDGEATTRKECPTLSAASFIEEWMESSVEPGQYPVL
GVRRTETGVIGRAELYTCLPQQVTRPLFEELHSTILMSATLRPFEVTEDVLGLEDPVTMA
YGEQFPEENRRTYAVETPALFASQRDDPTVQETVGNVIEDTVEFTPGNTLVFFPSYAEAE
RYYHRFSGDSTPYLDEPATRAEEMRREFTDEDDAVLFTSLWGTLAEGVSFDDDDARSVVV
VGVPYPHLDDRREAVQRAYEGAFGDEDSDEDAGWRYAVEIPTVRKTRQALGRAIRSPEDF
GARVLVDERYTHSQRVELGEYSVYPSFPPEERSEHIDIAPEKLKFAMLNFYSDKDAWDGT
PPQP
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagagtcgtccggccacgcgcgattcttcccgtacgatgagccgtacgaccaccag
gaggacgcgatgggcaacatccgcgaggcgctggtcgaggagcgtgacgtgctcttcgag
ggtgcctgcgggacgggcaagacgcttgcctcgctggtgccggcgctggagtacggccgc
gcggccggcaagacggtcgtcattacgaccaacgtccaccaacagacccggcagttcatc
gaggaggcccgtgccatcaacgaccaggaaccgattcggtcggtcgtcttccgcgggaaa
gtctcgatgtgccacatcgacgtcggctacgaggagtgtcaggccctgcgggatacgacc
cgcgatttggtcgacaaggaacaggatttggccgaactggaggaccgcgagggcgaactg
ctcgatgcgagcaaggacggcaacggcgaggccgcgcaggcccgcgggtcggtcatggac
gagatcgacgacatcgaagcgagcatcgaggcgctgcaggaagagcggaacatctgtgac
cgatattacaacaacctgaccggcgagaccgacgagttctaccagtggctctacgaggac
gtccggacgccggacgaaatctacgagcgcgcccacgcgatggatttctgcggctacgaa
ctcctgaaggacggcatcgagggcgtcgacctcgttatctgcaactaccaccatctgctt
gacccgatgattcgcgagcagttcttccggtggctgggccgcgaacccgaggacatcatc
gtcgtcttcgacgaggcccacaacgtcgcgggcgccgcccgtgaccacgcgacacgaaaa
ctcgccgaacagacgctggagggcgcgatggacgaactggaggagtgtgacgacgcccgc
gcggaaccggcggcgaacgtcattggcaccttccgcgatgcgctcgtcgagacctacgag
gattcgttcggcttcggcgaacgggaggcggtcggcgaggactgggaggacgttcccatc
gacaacgaggagggccgggacgacctctcggtttccttcctccagaactacacgggacag
ggcttctcgacggacctcgaacaggcgctggccctcggtgaggaactggaccgccgctac
gaacaggcctataaggacggtgaggcgacgacgcgcaaggagtgtccgacgctgtcggcg
gcgtcgttcatcgaggagtggatggagtcgtcggtcgaaccgggccagtaccccgtttta
ggcgttcgacgcaccgaaacgggcgtcatcggccgcgctgaactctacacctgtctgcca
cagcaggtcacccggccgctcttcgaggagttgcattcgacgattctgatgagcgcgacc
ctgcggcccttcgaggtgaccgaggacgtgctggggctggaggacccggtgacgatggcc
tacggcgagcagttcccggaggaaaaccgccgcacctacgccgtcgagaccccggcgctg
ttcgccagccagcgggacgaccccaccgtgcaggaaaccgtcggcaacgttatcgaggac
accgtcgagttcacccccggcaacacgctcgtcttcttcccgagttacgccgaggccgaa
cgctattaccaccgcttttcgggcgattcgacgccgtatctggacgaacccgcgacccgc
gccgaggagatgcgccgggagttcaccgacgaggacgacgcggtgcttttcacctcgctg
tggggtaccctcgcggagggggtcagtttcgacgacgacgacgctcggagcgtcgtggtc
gtcggcgtgccctacccgcatctggatgaccgacgtgaggccgtccagcgggcctacgag
ggcgccttcggtgacgaggactccgacgaggatgcgggctggcgctatgcggtcgaaatc
ccgacggtccggaagacgcggcaggcgctgggacgggccatccggtcgccggaggacttc
ggcgctcgcgtgctggtcgacgaacgctacacgcattcacagcgcgtcgagttaggcgag
tacagcgtctatccgtccttcccgcccgaggagcgcagcgaacacatcgacatcgctccc
gagaaactcaagttcgccatgctgaacttctacagcgacaaggacgcctgggacgggacg
ccgccacagccatga
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