Nocardia huaxiensis: H0264_30235
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Entry
H0264_30235 CDS
T07784
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nhu
Nocardia huaxiensis
Brite
KEGG Orthology (KO) [BR:
nhu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nhu03019
]
H0264_30235 (hrpA)
Enzymes [BR:
nhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H0264_30235 (hrpA)
Messenger RNA biogenesis [BR:
nhu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H0264_30235 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
nSTAND3
T2SSE
nSTAND_NTPase5
SLFN-g3_helicase
AAA_30
NACHT
AAA_25
ResIII
PhoH
ABC_tran
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QLY29497
UniProt:
A0A7D6VCF0
LinkDB
All DBs
Position
6646990..6651345
Genome browser
AA seq
1451 aa
AA seq
DB search
MTRTAATIRELRTRLAELSIRDEHRLRRRLDKARGGDLTDLEHEIDAARARVETRRNAVP
TIRYPEQLPVSARRDDIAKAIAEHQVVIVAGETGSGKTTQLPKICLELGRGIRGTIGHTQ
PRRLAARTVAERIAEELGTELGDVVGYTVRFTDQASDRTLVKLMTDGILLAEIQRDRLLR
RYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKIVITSATIDPELFARHFSDENGTPA
PIVEVSGRSFPVEIRYRPLSLEVPLTSDDPDDEDTEIVDRDPTDAIADGVRELLAEGDGD
ILVFLSGEREIRDTADSLRDLKLPRTEILPLYARLSAAEQHRVFSAHTGRRVVLATNVAE
TSLTVPGIRYVIDPGTARISRYSMRTKVQRLPIEPISQASARQRSGRCGRVADGIAIRLY
AEDDFESRPQFTEPEILRTNLAAVILQMTALGLGDIESFPFVEAPDNRAIRDGIALLEEL
GALGRRDENARGTELPDAGLVLTPIGREMAQLPVDPRMARMLVEANRTGCLAEVLIIVAA
MSIQDVRERPVEFQQAADTKHARFTVEGSDFLAYLRLWDYLGEQRKSLSANQFRRLCRDE
FLHYLRIREWQDLHGQLRTITRGLGWSADSSESRSGNTDSPITSDHRERGAVAARGRDGR
GTNAGRGQRNAASEDGNSRARSAATGGRESSTGQGRDERSSGAGPSRSERGSGAGRNQGG
RDSATGRDQVERGFAADRGTAGGAERSDRLAALAAAADDALPWDVTSIHQALLAGMLSHI
GVREAESREFLGARNAKFMIFPGSSLAKKPPRWVMAAELVETSRLWGRTAARVEPEWAER
LAGDLVKRTYSEPHWSSKRGATLAYERVTLYGVPLVTQRRVDFGRIDPELARELFIRHAL
VQGEWQTKHAFFERNRELLDDVADLEHRARRRDILVDDQVLFDFYDQRIPADVVSVRHFD
SWWKKTQRAEPELLDFTASTVVNEDAALLDPTSYPDSWRQGELTFPLTYQFEPGQADDGV
TVHIPVAQLAHVRAVGFDWLVPGMREELVAALIKSLPKQLRRSVVPAPDFAKAALERLTP
RAEPLRTGLARELSQLGSVTITPAHLDPAAIPDHLRMTFAVTDPSGAVAARGKSLSELKT
RLSEQVSKSVARANNAAERAPATVWTSESLGTLPTSVKREVGGQTITGYPALVAEPEGVA
VRVLSSPVQQAAAMRTGTRALLLNAIPTTVRAVTASLPPTDRLALSQNPYGSLDALVEDC
RACAADELIAAHGGPVRSPEQFKALADKVRPQFTSAVATIVRTVVPVLAEAHRVRSALAD
TRDREAAEDVTHQLDDLVFPGFISEWGSPRLRELPRYLEAARLRLEALPAAANRDQQGML
ELDRVHAAYDRLVDSLPEGRRGGRDVIEIWWMIEELRVSLFAQQLGTPYPVSAKRIEKAI
DTVRKAPPPKR
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggaccgccgccactattcgcgagcttcgcacccgcctggccgaactctcgatc
cgcgacgaacaccggttgcgtcggcggctcgacaaggcccgcggcggcgatctcaccgat
ctcgagcacgagatcgacgccgcccgagcccgggtcgagactcggcgcaacgccgtaccg
accatccggtacccggagcagctacccgtctccgcccgccgcgacgatatcgccaaggcc
atcgccgaacaccaggtcgtgatcgtggccggtgagaccggctccggcaagaccacccag
ctacccaagatctgcctcgaactcggccgcggcatccgcgggaccatcgggcacacccag
ccgcgccggctcgccgcgcgcacggtggccgagcggatcgccgaggaactcgggaccgaa
ctcggggatgtggtcggctacacggtgcgattcaccgatcaggcgtcggaccgcacactc
gtcaagctcatgaccgacggcattctgctggccgaaatccagcgcgatcggctgctgcgg
cgctacgacacgatcatcatcgacgaggcgcacgagcgcagcctcaatatcgacttcctg
ctcgggtacctgaagcagctgctgcccaaacggccggatctgaagatcgtcatcacctcg
gcgaccatcgacccggagctgttcgcgcggcacttcagcgacgagaacggcacgcccgca
ccgattgtcgaggtgtcgggacgctcgttcccggtggagatccggtatcggccgctgtcg
ctggaggttccgctcacctcggacgatcccgatgacgaggacaccgagatcgtcgaccgg
gaccccaccgacgccattgccgacggggtgcgggaactgctcgccgaaggagacggggac
attctggtgttcctgtccggcgagcgggagatccgcgacaccgcggactcgctgcgggat
ctgaaactgccgcgcaccgagattctgccgctgtacgcgcgactgtcggcggccgaacag
cacagggtgttctcggcgcacaccgggcggcgcgtggtgctggcgaccaatgtggccgag
acctcgctgaccgtgccgggcatccggtacgtgatcgaccccggcacagcgcgcatttcg
cggtactccatgcgcaccaaggtgcagcggctgccgatcgaaccgatctcacaggcgtcc
gcgcggcagcggtccgggcgctgcggacgtgtggccgacggcatcgccatccggctgtac
gccgaggacgatttcgaatcacggccgcagttcaccgaacccgagattctgcgcaccaac
ctggccgcggtcattctgcaaatgaccgcgctcgggctcggcgatatcgagagcttcccg
ttcgtggaagcgcccgacaatcgcgccatccgcgacggcatcgcgctgctcgaagagctc
ggcgcactcggccgccgtgacgagaacgcccggggcacagagcttcccgacgccgggctg
gtgctcacgccgatcggccgcgaaatggcgcagttgccggtcgacccgcgcatggcgcgc
atgctcgtcgaggccaaccgcaccggctgcctggcggaggtcctgatcatcgtggccgcc
atgtccattcaggatgtgcgcgaacgcccggtggaattccagcaggccgccgacaccaaa
cacgcccgcttcaccgtcgaaggctccgacttcctggcctacctgcgcctctgggactac
ctcggcgaacagcgcaaatccctgtccgccaaccagttccgccgcctgtgccgcgacgag
ttcctgcactacctgcgcattcgcgaatggcaggacctgcacggccagctccgcaccatc
acccgcggcctcggctggtcggcggacagcagcgagagccgcagtggaaacaccgacagc
ccaatcacttccgatcaccgcgagcgcggcgcagtcgcagccagagggcgggacgggcga
ggcaccaacgccggccggggccagcggaacgccgcatcggaggacggcaactcacgcgcc
cgcagcgctgccaccggtgggcgcgagtcttccaccgggcagggtcgcgacgagcgcagc
tccggcgcagggccaagtcggagtgagcgtggttccggcgccggccgaaaccagggcggg
cgcgactccgccaccggccgcgatcaggttgagcgcgggttcgctgcggatcggggaacg
gcaggcggtgcggagcggagcgatcggctcgccgcgctggctgcggccgctgatgatgcg
ctgccctgggatgtgacgtctattcatcaggcgctgctggcgggcatgctgtcgcatatc
ggggtgcgggaggcggagagccgggagttcctcggggcgcgcaatgcgaagttcatgatc
ttcccggggtcttcgctggccaagaagccgccgcggtgggtgatggcggcggaactggtg
gagacttcgcgactgtgggggcggacggcggcgcgcgtcgagcccgagtgggccgagcgg
ctggccggggatttggtgaaacgcacctattccgagccgcattggtcgtccaagcggggg
gcgacgctggcctatgagcgggtgacgctgtacggggtgccgctggtgacgcagcggcgg
gtggacttcgggcggatcgatccggagctggctcgggagctgttcattcggcacgcgctg
gtgcagggcgagtggcagaccaagcacgcctttttcgagcgcaatcgcgaattgctcgac
gatgtggccgatttggagcatcgggcgcggcggcgcgacattctggtcgacgatcaggtg
ctgttcgatttctacgatcagcggattccggccgatgtggtgtcggttcggcatttcgac
agctggtggaagaagacgcagcgggcggaacccgaactgctggacttcaccgcctccacg
gtcgtgaacgaggatgcggcactgctggatccgacctcctacccggacagctggcggcaa
ggggaattgaccttcccactcacctaccagttcgagccggggcaggccgatgacggtgtc
accgtgcacattccggtcgcgcagctggcgcacgtacgggccgtcggcttcgactggctg
gtgccgggcatgcgcgaggagctggtcgcggcgctcatcaagtcgctgccgaaacagttg
cgccgcagcgtggttcccgcgccggacttcgccaaggccgcgctggagcgcctcaccccg
cgcgccgaaccgctgcgcaccgggctggcgcgggaactgtcgcagctggggtcggtgacc
atcaccccggcgcatctggaccccgccgcaatacccgaccatctgcgcatgaccttcgcc
gtcaccgacccctcgggtgcggtggccgcgcgcggcaagagcctgtccgagctgaaaacc
cgcctatccgagcaggtttcgaagtccgtcgcgcgggccaacaatgccgccgaacgcgca
ccggccacggtgtggacctcggaatcactgggcaccctgccgacctcggtgaagcgcgag
gtcggcggacagaccattaccggctatccggcgctggtggccgaacccgagggtgtggcg
gtacgcgtgctcagctcccccgtgcagcaggccgccgccatgcgcaccggcacccgggca
ctgctgctcaacgccatcccgacgacggtgcgcgcggtcaccgcgagcctgccgccgacg
gaccggcttgcgctgagccagaatccgtacggctcgctcgacgcgctggtggaggactgc
cgcgcctgcgccgccgacgaactcatcgccgcccacgggggaccggtgcgcagcccggaa
cagttcaaggcgctggcggacaaggtgcgcccgcaattcacctcggccgtcgcgaccatt
gtgcgcacggtcgtgccggtgctggccgaagcgcaccgcgtgcgctcggccctggccgac
acccgggatcgggaagcggccgaggatgtcacgcatcagctcgacgatctggtgttcccc
ggcttcatctccgagtggggcagcccccgattgcgggaattgccacgctatctggaagcc
gcccgactgcgcctggaagccctgcccgccgccgccaatcgcgaccagcagggcatgctc
gagctggatcgcgtgcacgccgcctacgaccgcctggtcgactcgctgcccgagggccgc
cggggcggccgcgacgtgatcgaaatctggtggatgatcgaggaattgcgcgtgagcctg
ttcgcccagcagctcggcaccccgtacccggtgtccgccaaacgcatcgagaaggccatc
gacaccgtccgaaaagctccgccgcccaagcgctga
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