Nocardia huaxiensis: H0264_34580
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Entry
H0264_34580 CDS
T07784
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nhu
Nocardia huaxiensis
Brite
KEGG Orthology (KO) [BR:
nhu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nhu03016
]
H0264_34580
Enzymes [BR:
nhu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H0264_34580
Transfer RNA biogenesis [BR:
nhu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H0264_34580
Prokaryotic type
tRNA splicing ligases
H0264_34580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QLY30225
UniProt:
A0A7D6ZP85
LinkDB
All DBs
Position
7543808..7545031
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AA seq
407 aa
AA seq
DB search
MFPVELRGAKAQTLMWAHEHEIEPAALQQLRNISRLEWVHGVRVMPDVHLGKGATVGSVI
AMKDAVAPAAVGVDIGCGMEAVRTSLTAAQLPDDLRSLRSRIEAAVPVGFAKHDDPVNVH
RLNAEVSGQRSAGTTMRAGWEKFWKSFGSLHEGVQSLESKAHKQIGTLGGGNHFCEVCLD
LEGNVWILLHSGSRNIGKELAERHMAIARALPHNQNLVDRDLAVFLANTSEMDAYRRDLM
WAQEYAARNRAVMLALVCKAVRDEFAGLEVGFDEPISCHHNYVAEEVIDGIPMLVTRKGA
VRAGDGDLALIPGSMGTRSYVVRGKGNPASYQSASHGAGRRMSRSAAKRQFTVADLVAQT
EGVESRKDIGVLDEIPAAYKDIDAVIEAQGDLVDVVATLRQVLCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccgtcgagctgcgcggagcgaaggcgcagacgctcatgtgggcccacgagcac
gagatcgaacctgctgcgctgcagcagcttcggaatatctcacggctggaatgggtgcac
ggtgtgcgcgtcatgccggacgtgcacctcggtaagggcgccacggtcggctctgtcatc
gccatgaaggatgccgtcgcgcccgcggccgtcggcgtcgatatcggatgcgggatggaa
gccgtgcgcacctcactgacggccgcccagctgcccgatgatctgcggtcgctgcggtcg
cggatcgaggcggcggtgcccgtcgggttcgccaagcatgacgatccggtgaatgtgcac
cggctcaatgccgaggtgtccggtcagcgcagcgcggggaccaccatgcgcgccggctgg
gagaagttctggaagtcgttcgggtcgctgcacgagggtgtgcagtcgctggaatccaag
gcgcacaagcagatcgggacgctgggcggcgggaatcacttctgcgaggtttgtctggat
ttggaggggaatgtctggattctgctgcactccgggagccggaatatcggaaaagaacta
gccgagcggcatatggctatcgcgcgggcactgccgcacaaccagaatctggtggaccgg
gatctggcggtgtttctggcgaatacctcggagatggacgcttaccggcgggatctgatg
tgggcgcaggaatacgctgcgcggaatcgcgctgtcatgctggcgctcgtgtgcaaggcc
gtgcgggacgagttcgcgggcctggaagtcgggttcgacgagcccatctcatgccaccac
aactatgtggccgaggaggtcatcgacgggattcccatgctcgtgacgcgcaagggtgcg
gtgcgggcgggggacggggacctggcattgattccggggtccatggggactcggtcgtat
gtggttcgcgggaagggaaatccggcgtcctatcagtccgcttcgcatggggcggggcgg
cggatgagccggagtgcggccaagcggcagttcaccgtggctgatctggtggcgcagacc
gagggcgtcgagtcgcggaaggacatcggggtgctggatgagattccggccgcgtacaag
gacatcgacgcggtgatcgaggcgcagggggatctggtcgatgtcgtggccacgctgcgg
caggtgctgtgcgtgaaggggtga
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