Novosphingobium humi: PQ457_01595
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Entry
PQ457_01595 CDS
T08806
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
nhum
Novosphingobium humi
Pathway
nhum02020
Two-component system
nhum02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nhum00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PQ457_01595 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PQ457_01595 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nhum03021
]
PQ457_01595 (rpoN)
Transcription machinery [BR:
nhum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PQ457_01595 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_IclR
Arg_repressor
HTH_Tnp_ISL3
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
WCT77700
LinkDB
All DBs
Position
complement(334716..336230)
Genome browser
AA seq
504 aa
AA seq
DB search
MALGPRLDLRQTQSLVMTPQLQQAIKLLTLSNLEIEAFIGDALDANPLLEMGEAPPVEPV
EIEARRTSLESSPCDQLIGEGMAAEDRPLDISAETLDVDRDTGDGGGDTPERYEPAFEGE
ATISGGGEAPAMEEYGAFDETLAEHLHGQIGAVVRDPKLAFIARFLIDQLDDAGYLAASL
REIAMDLQVSPAEVEAALALVQSLDPTGVGARSLSECIALQAKEADRYDPAMARLIDNLE
MIARGELPRLRRMCGVDEEDFADMLAELRGYDPKPGLRYGGGAAAPVVPDILISARADGG
WNVALNQATLPKLILNRSYYLEMRGACAGKSAGKEDRGWLSEKLADANWLVKALDQRQKT
ILKVASELVRQQEGFFRHGVSQLRPLTLRAVAETVGLHESTVSRVTSNKYLMCERGTFEL
KYFFTSGVSGADGEGVSAEAVKAAIKQLIDNEDPKKILSDDTLVDLLKEKGFELARRTVA
KYREAIGLGSSVQRRRQKALSGKR
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggggccgcgcctcgatctacgccagacacagtcgctggtgatgacgccgcaa
ctgcagcaggcgatcaagctgctcacgctgtccaatctggagatcgaggcgtttatcggc
gatgcgctggacgccaaccccctgctcgaaatgggcgaggcgccgcctgtcgaacccgtc
gagatcgaggcgcgccgcaccagccttgaaagcagcccctgcgaccaattgatcggcgaa
ggcatggccgccgaggaccgcccgctggatatcagcgccgagacgctcgatgtggaccgg
gacacgggcgatggcgggggtgatacgcccgaacgctatgaaccggcctttgagggcgaa
gcaaccatctccggcggcggcgaagccccggcgatggaggaatatggcgcctttgacgag
acgttggctgagcatctgcatggtcagatcggcgcggtggtgcgcgatcccaagctggct
ttcatcgcccgcttcctgatcgatcaattggacgatgcgggctacctggccgcttccctg
cgcgaaatcgccatggacctgcaagtctcgcccgccgaggtcgaggccgcgctggccttg
gtccaatcgcttgatcccacgggcgtaggcgcgcgcagcctgtcggagtgtatcgcgttg
caggccaaagaggcggaccgctatgatccggcgatggcccggctgatcgacaatctggag
atgattgcgcgcggcgaattgccccgcctgcgccggatgtgcggcgtggatgaggaagat
ttcgccgacatgctggccgaattgcgcggctatgatccaaaaccgggcctgcgctatggc
ggcggggccgccgcgccggtggtgcccgacattctgatttcggcgcgcgccgatggcggc
tggaatgtcgcgctcaatcaggccaccctgcccaagctgatcctcaaccgcagctattat
ctggaaatgcgcggcgcctgcgctggcaaaagcgcgggcaaggaggatcgcgggtggttg
tcggaaaagctggccgatgccaactggctggtcaaagcgctggaccagcggcagaagacg
atcctcaaagtggccagcgaattggtgcgccagcaggaaggctttttccgccatggcgtc
agccagttgaggccgctgacattgcgcgcggtggccgagacggtggggctgcatgaatcg
accgtcagccgcgtgaccagcaacaaatatcttatgtgcgagcggggcacgtttgagctg
aaatatttcttcaccagcggcgtatcgggcgcggatggcgaaggcgtttcggccgaggcg
gtcaaggccgcgatcaagcagttgatcgacaatgaagaccccaagaagatcctgtcggac
gatacgctggtcgatctgctgaaagaaaaaggctttgaactggcccgccgcaccgtggcc
aaatatcgcgaggcgatcgggcttggttcatccgtgcagcgccgccgtcaaaaagcgctg
agcgggaaacgttag
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