Novosphingobium humi: PQ457_04590
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Entry
PQ457_04590 CDS
T08806
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nhum
Novosphingobium humi
Pathway
nhum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nhum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PQ457_04590 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nhum03019
]
PQ457_04590 (pnp)
03016 Transfer RNA biogenesis [BR:
nhum03016
]
PQ457_04590 (pnp)
Enzymes [BR:
nhum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PQ457_04590 (pnp)
Messenger RNA biogenesis [BR:
nhum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PQ457_04590 (pnp)
Transfer RNA biogenesis [BR:
nhum03016
]
Prokaryotic type
tRNA degradation factors
PQ457_04590 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
Peptidase_M64
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WCT78257
UniProt:
A0ABY7TYA1
LinkDB
All DBs
Position
1012136..1014445
Genome browser
AA seq
769 aa
AA seq
DB search
MFDVKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLVSRLIDRPVRPLFPEGFYNEINVIAQVMSY
DGETEPDIVAMIAASAALTISGVPFMGPIGAVRVGFKDGEYQLNPSMSQVAEGRLDLVVA
ATGNAVMMVESEAKELSEDEMLGAVMFAHDECRKVVNAIIDLAEKAAKEPWEIDLSDNTA
DMKAKLKKLVGKDIAAAYKLTDKSARSNALNEVRAKAKAAYADESPQTQMVAIKVTKKLE
AEIVRTAILKDGKRIDGRTTTQIRPIESMVGFLPRTHGSALFTRGETQSICTTTLGTKDA
EQMIDGLDGLSYQNFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPAKEDF
PYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLVRPVSGIAMGLILEGDEFTVLSDI
LGDEDHLGDMDFKVAGTSEGITTMQMDIKVAGITQEIMAQALAQAKEGRAHILGEMLKAL
GEARTELSAHAPRIETISIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGIIKISSSD
LGQIEAAKAWILGIVEEAEVGKVYKGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVEK
PTDVVKEGQEVFVKVLEIDQRGKVRLSMRVVDQETGAELEDTRPPREPREPRGEGRGDRG
GDRRPRGGDRDRGPRREGGRDGGRDRGPRRDREEGGNPDHMPAFLKSED
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgttaagaccgtatcgctggagtggggcggaaagaccctcaccctcgaaacc
ggccgtatcgcccgtcaggctgacggcgctgttctggccacctatggcgaaaccgtggtg
ctttgcgccgtgactgccgccaagtcggtgaaggaaggccaggacttcttcccgctgacc
gtccactatcaggaaaagttttcggctgcaggccgtattcccggtggtttcttcaagcgc
gagcgcggcgcgacggaaaaggaaacgctggtttcccgtctgatcgaccgtccggtccgc
ccgctgttccccgaaggtttctataacgaaatcaacgtcatcgctcaggtgatgagctat
gacggcgaaaccgaacccgatatcgtcgcgatgatcgccgcctcggccgcgctgaccatt
tcgggcgtgcctttcatgggccccatcggcgcggtgcgcgtgggcttcaaggatggcgaa
tatcagctcaacccgtcgatgtcgcaggtggctgaaggccgtctcgacctcgtggtcgcc
gccaccggcaatgccgtgatgatggtggaatcggaagccaaggaactctcggaagacgag
atgctgggcgccgtgatgtttgcgcatgatgaatgccgcaaggtggtgaacgccatcatc
gatctggccgaaaaggccgccaaggagccttgggaaatcgacctgtcggacaacaccgcc
gacatgaaggccaagctcaagaagctggtgggcaaggacatcgctgctgcctataagctg
accgacaagtcggcccgctcgaacgcgctcaatgaagtgcgcgccaaggccaaggccgcc
tatgccgacgaatcgccccagacccagatggtcgccatcaaggtgaccaagaagctggaa
gccgaaatcgtgcgcaccgccatcctcaaggacggcaagcgtatcgacgggcgcaccacc
acgcagatccgcccgatcgaatcgatggtcggcttcctgccccgcacccatggttcggcg
ctgttcacgcgcggtgaaacgcagtcgatctgcaccaccacgctgggcaccaaggacgcc
gagcagatgatcgacggtcttgatggcctgtcgtatcaaaacttcatgctgcactataac
ttccccccctattcggtgggtgaagtgggccgcttcggcgcccccggtcgccgcgaagtg
ggccacggcaagctggcatggcgcgcgctgcacccggtgctgcccgccaaggaagacttc
ccctacacgatccgcgttctctcggacatcaccgagtcgaacggttcgtcctcaatggcc
accgtctgcggcggttcgctctcgatgatggacgccggtgtgccgctggtgcgtccggtt
tcgggcatcgccatgggcctgatccttgaaggcgacgagttcaccgtgctgtccgacatt
ctgggtgatgaagatcacctgggcgacatggacttcaaggtggccggcacgtctgaaggc
atcaccacgatgcagatggacatcaaggtcgcgggcatcacgcaggaaatcatggcgcag
gctctggctcaggccaaggaaggccgcgcgcatatcctgggcgaaatgctcaaggccttg
ggtgaagcgcgcaccgaactgtcggcgcatgctccgcgcatcgaaaccatcagcatcgac
aagtcgaagatccgtgacgtcatcggcacgggcggcaaggtgatccgcgagatcgtggcc
accacgggtgccaaggtcgacattgatgatgaaggcatcatcaagatctcgtcgagcgat
ctgggccagatcgaggccgccaaggcctggattctgggcattgtggaagaagccgaagtc
ggcaaggtctacaagggcaaggtcgtcaacatcgtcgatttcggcgctttcgtgaacttc
atgggcggcaaggacggtctggtccacgtgtcggaaatgaagaacgagcgcgtggaaaag
ccgaccgacgttgtgaaggaaggccaggaagtcttcgtcaaggtcctcgagatcgaccag
cgcggcaaggtccgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgccgagctggaa
gacacccgtccgccccgcgaaccgcgcgaaccgcgtggtgaaggccgtggcgaccgtggc
ggcgaccgccgtccgcgcggcggcgaccgcgaccgtggtccgcgccgcgaaggcggccgc
gatggtggccgtgaccgtggcccgcgccgtgaccgtgaagaggggggcaaccccgatcac
atgccggctttcctgaagtcggaagactga
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