Novosphingobium humi: PQ457_08260
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Entry
PQ457_08260 CDS
T08806
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
nhum
Novosphingobium humi
Brite
KEGG Orthology (KO) [BR:
nhum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nhum03019
]
PQ457_08260 (hrpB)
Enzymes [BR:
nhum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PQ457_08260 (hrpB)
Messenger RNA biogenesis [BR:
nhum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PQ457_08260 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
Flavi_DEAD
AAA_30
ResIII
AAA_19
HA2_N
Motif
Other DBs
NCBI-ProteinID:
WCT75955
LinkDB
All DBs
Position
complement(1748104..1750551)
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AA seq
815 aa
AA seq
DB search
MSDLPIHTVLPELLQALRDRPNAVLIAPPGAGKTTSVAPALIREPWCEGKVILLSPRRVA
ARAAAERMAEMMGESAGQTVGYLTRLDSKQSARTRILVVTEAIFVATILADPELTGISAV
LFDEAHERNLDSDLGLALAAECQQVLREDLRIIPMSATIDGERFAALLGPDTPVIESEGR
AHPLTIRWLGARAEARIDEQMVSAILTAWREEEGDILAFLPGVGEITRVAEKLEERLKNT
PILPLHGQCEPQAQRAAIRRDPEGRRRIVLATSIAETSLTLDGVSVVVDCGLSRRPEYDK
AAGVTRLITTRSSQAAAAQRAGRAARQRPGVAYRLWEEAAHAGRPAYDPPEMLTSDLAPF
TLALAQWGALDPGAMAWIDPPPAAALSAARAKLVSLGALDGDRITDHGRAMASLPMGPEL
AHMLLYGTARGAGELAAMLAFLLQERALGGRGEDLLVRLDRWRGDRSAKAEAARQMAKQW
ARRAEKLVSPIPGEAPPAGVLLAEGFPDNLAKRRDAGGEEWLAAGGRGLVLDGLSSLARA
DYLAVGEAQGSAKGARITGAIALSEAEVLEHLAHRIERRSTLRWVADERRVEALLERRLG
AFVFARGSDPKPDLAAITAFLCERIRAEGLGLLPLGRASLNLLKRARFAGVEALSEEALL
ADLEDWAGPHLKRRLDSVDPGALHQALLDRLGWDGKQTLDRLVPSEFRSPAGSTHPIDYD
DAGGPSVEVRVQALFGLERHPSFGNPPQPLRLLLTSPGGKPIQTTLDLPGFWRGSWRDVV
KDMKGRYPKHRWPDEPWAEDPSLKTKNAFAAQRRT
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagacctgcccatccataccgtcctgcctgaacttttgcaggccctgcgcgatcgc
cccaatgccgtgctgatcgcgccgcccggcgcgggcaagacgaccagcgtggcgcccgcg
ttgatccgtgaaccttggtgtgagggcaaggtgatcctgctctcgccccggcgcgtggcg
gcgcgcgcggcagccgagcgtatggccgaaatgatgggcgagagcgccgggcagacggtg
ggctatctgacccgtctcgacagcaaacagtcggccaggacgcgcattctggtggtcacc
gaggcgatttttgtcgccaccattctggccgatcccgaattgacgggcatttccgccgtg
ctgtttgacgaggcgcatgagcgcaatcttgacagcgacttaggccttgctcttgcggcg
gaatgtcagcaagttctgcgcgaggacctgcgcatcatccccatgtcggccacgattgac
ggcgagcgtttcgccgccttgctcggccccgacacgcccgtgatcgagagcgaggggcgc
gcccatccgctcaccatccgctggcttggcgcgcgggccgaggcgcggatcgacgagcag
atggtcagcgcgatcctgaccgcatggcgcgaggaggaaggcgatattctggccttcctg
cccggcgtgggggaaatcacccgcgtggcggaaaagctggaggagcggctgaagaacacg
ccgatcctgccgctgcatggccaatgcgagccgcaggcgcagcgcgccgccatccgtcgc
gatcccgaaggtcgccgccgcatcgtcttggccaccagtattgccgaaacttcgctgacg
ctcgacggcgtgtcggtggtggttgattgcggcctgtcgcgccgcccggaatatgacaag
gccgcaggtgtcacccgcctgatcaccacgcgctcgtctcaggcggcggctgcccagcgc
gcgggccgcgccgcgcgtcagcggccaggcgtggcctatcggctgtgggaagaggccgcc
catgcgggccgtcccgcctatgatccgcccgaaatgctgaccagtgacctggcgcccttt
acgctggcgctggcgcaatggggggcgctcgatccgggggcgatggcgtggattgatcct
cctccggcggcagctttgtcggcggcgcgggccaaactggtcagccttggcgcgctggat
ggcgaccggatcaccgatcatggccgcgcgatggccagcctgcccatggggccggaactg
gcgcatatgctgctttatggcacggcgcgcggggcgggggagctagcggcaatgctggcc
tttctgcttcaggaacgggccttgggcgggcggggcgaagatcttttggtccggcttgac
cgctggcgtggggatcgttcggccaaggccgaggcggcgcggcaaatggcaaaacaatgg
gcgcggcgggccgaaaagctggtgtcgcccatccccggcgaagccccgcctgcgggcgta
ctgctggccgagggctttcccgacaatctggccaagcggcgcgatgccggcggcgaggaa
tggctggcggcggggggtagggggctggtgctggacggcctgtcctcgctggcgcgtgcg
gactatctggccgtgggcgaggcgcaagggtcggccaagggcgcgcggatcaccggcgcg
attgccttgagcgaggccgaggttctggagcatctggcgcatcggatcgagcggcgctcg
actttgcgctgggtggccgatgaaaggcgggtcgaggcgctgctggaacggcggctgggc
gctttcgtctttgcgcggggcagcgatcccaagcctgacctggccgcgatcacggccttt
ctgtgcgagcggatcagggccgaggggctggggctgttgccgctcggccgcgcgagcctc
aatctgctcaaacgcgcgcgctttgccggggtggaggcgttgagcgaggaggccttgctg
gccgatctggaggattgggcggggccgcatctgaaacggcggctcgattcggttgatccg
ggcgcgctgcatcaggccttgcttgaccgacttggctgggatgggaaacagacgcttgac
cgactggtgccgtccgaattccgcagccctgcggggagcacccatcccatcgactatgac
gatgcgggcggcccatcggtcgaggtgcgcgtgcaggcgcttttcggccttgagcgccac
cccagtttcggcaacccgccgcaacccttgcggcttttgctcacatctccgggcggaaag
ccgatccagaccacgctcgatctgcccggattctggcgcggatcgtggcgcgatgtggtc
aaggacatgaaggggagataccccaaacaccgctggcccgacgagccatgggccgaagac
cccagcctgaagacgaaaaacgcgtttgcagcgcaacgtcgcacttga
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