Novosphingobium humi: PQ457_08750
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Entry
PQ457_08750 CDS
T08806
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nhum
Novosphingobium humi
Pathway
nhum03030
DNA replication
nhum03430
Mismatch repair
nhum03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nhum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PQ457_08750 (dnaE)
03430 Mismatch repair
PQ457_08750 (dnaE)
03440 Homologous recombination
PQ457_08750 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nhum03032
]
PQ457_08750 (dnaE)
03400 DNA repair and recombination proteins [BR:
nhum03400
]
PQ457_08750 (dnaE)
Enzymes [BR:
nhum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PQ457_08750 (dnaE)
DNA replication proteins [BR:
nhum03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PQ457_08750 (dnaE)
DNA repair and recombination proteins [BR:
nhum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PQ457_08750 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
WCT76043
LinkDB
All DBs
Position
complement(1855817..1859374)
Genome browser
AA seq
1185 aa
AA seq
DB search
MAHSSFVPLHVYSSFTMLDGAIDPKAMAKLAKKHNFPAMAVTDRNGLYCAPAFAGACKDL
GVQPIIGTLLSIARPSGDGGGVLPSAPQIDAVVLLAQNEAGWNNLCHLVSKAHLERPLEF
DPHVRLSDLDGHTDGLLCLTGAGEGALARMFAEGQNEAALRYADALQAAFPNRLYIEIAR
TGDPAEEGGEEALIDLAYARDIPLVATNPAHFADAKDSAAHDAMLCIAGSTHVDAPDRKR
SNPQQWVRSAELMEQLFADLPEALANTLVIAQRCAFEPPKRKPLLPSLAGDKEGEARMMV
DHARAGLAKRLAPYWPGVDEATLDKALAAPEENYEALRPLGVDESFLEYAKRLDFETGII
NRMGFAGYFLIVADFIQWAKQNDIPVGPGRGSGAGSLVAWALTITDLDPLRLGLLFERFL
NPERVSMPDFDIDFCETRRGEVIRYVQRKYGADHVAQIITFGKLKARAVLRDTGRILQMS
YGQVDRLTKMVPNHPTDPWSLERALNGVQELHREYTNDPEVKRLIDLAMQLEGMPRNSST
HAAGVVIGDRPLEQLVPLYRDPRSDMPVTQFDMKYVENTGLIKFDFLGLKTLSILRKAVD
LLGRRGINIDLSTLPWDDSDVYDLLKRGDTVGVFQLESEGMRRTLAAVKPTNFGDIIALV
SLYRPGPMDNIPLFGQRKNGMAPIEYPHEKLSGILAETYGIFVYQEQVMQAAQILAGYSL
GDADLLRRAMGKKVQAEMDAQRLRFVIGCREVSDIDKDKANELFDIIDKFAGYGFNKSHA
AAYALLAYQTAWFKAHYPHEFYAAAMCFDMHQSEKLAVFVDDMRRNGIAVAGPCLNHSEA
EFMVEQTADGHQVRYALAGIRNVGEKAMEVVVAERQATGPFKDLADLFTRVPYGSLNRRM
LEGLAASGAFDALEPNRAKVLANADMLLAVAEEAERTRTSGQHGLFGGDDAGAGNIRLID
VPAWSRSDQMTKERENFGFYFAAHPVEQWRAVASSHGARSHASLLAGGVAGRTGAVMAAM
VENVQKRKTKRGKDFIMADFSDQSGNFSASCFEETLVDSFVNWAKEGACILLTVELDSPS
PEEPPRVTVRGAQALSEVKAAAKMTLSLDVSRPEVFGELATILPRGGLGTVEVVLKTGGA
QEPRLRLGRDFLLDGELTDLIAGLEGVANVSLKPTRAGGHLRLVA
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggcacattcttccttcgtcccgctgcatgtctattccagctttaccatgctggatggc
gccattgaccccaaggccatggccaaactggcgaagaagcacaattttcccgccatggcg
gtgacggaccgcaatgggctttactgcgcgcctgcctttgcgggggcgtgcaaggacttg
ggcgtccagccgatcatcggcacgctgctttccattgcgcggcccagcggggatggcggc
ggcgtgctgccatccgcgccccagatcgacgcggtggtcctgctggcccagaacgaggcg
gggtggaacaatctgtgccatctggtttccaaggcgcatcttgagcgcccgctggaattt
gatccccatgtgcgcctgtccgatctcgacggccatacggacgggttgctctgcctgacc
ggcgcgggcgagggcgccttggcccgcatgtttgccgaggggcagaacgaggcggccctg
cgctatgcagatgcgttgcaggcggcctttcccaaccggctctatatcgagatcgcccgc
accggcgatccggccgaggagggcggcgaggaggcgctgatcgaccttgcctatgcccgc
gacattccgctggtggcgacaaatccggcccattttgccgatgccaaggacagcgcggcc
catgacgccatgctttgtatcgccgggtccacccatgtcgatgcgcccgaccgcaagcgc
tccaatccccagcaatgggtgcgcagcgccgagttgatggaacagctctttgccgatctg
cccgaggctttggccaatacgctggtgattgcccagcgctgcgcctttgagccgcccaag
cgcaagccgctgctgccgtctctggcgggcgacaaggaaggcgaggcgcgcatgatggtc
gatcacgcgcgcgcgggtctggccaagcgtctggctccctactggccgggcgtggacgag
gcgacgctggacaaggcgctggccgcgcctgaggaaaattatgaggcgctgcggcctctg
ggcgtggatgagagcttcctcgaatatgccaaacgcctcgatttcgagacgggcatcatc
aaccgcatgggttttgccggttacttcctgatcgtggccgactttatccaatgggccaag
cagaatgacatccccgtggggccggggcgcggttcgggtgctggcagccttgtggcctgg
gcgctgaccatcaccgaccttgatccgctgcgtctgggtctgcttttcgaacgtttcctc
aacccggaacgcgtctcgatgcccgacttcgacatcgacttttgcgaaacgcggcgcggc
gaggtgatccgctatgttcagcgcaaatatggtgcggaccatgtggcccagatcatcacc
tttggtaagctgaaggcgcgcgccgtgctgcgcgatacgggccgcattcttcagatgtcc
tatggacaggtcgaccgcctgactaagatggtgcccaatcatccgaccgatccgtggagc
ctcgaacgtgcgctcaacggcgtgcaggaactgcaccgcgaatataccaatgaccccgag
gtcaagcgcctcattgatctggcgatgcagttggagggcatgccgcgcaacagttcgacc
cacgcggcgggcgtggtgatcggcgacaggccgctcgaacaactggtcccgctctatcgc
gatccgcgttcggacatgccggtgacgcagttcgacatgaaatatgtcgagaacacgggc
ctcatcaaattcgactttctgggcctcaaaacgctctcgatcctgcgcaaggcggtggat
cttttggggcggcgagggatcaatatcgatctttccaccctgccttgggacgattccgat
gtgtatgacctgctcaagcgcggcgatacggtgggtgtgttccagcttgaatccgaaggt
atgcggcgcacgctggcggcggtgaagcccaccaattttggcgacatcatcgcgctcgtc
tcgctctatcgtccggggccgatggacaacatccccctgttcggccagcgcaagaacggc
atggcgcccatcgaatatccgcatgagaaactgtcgggcattctggccgaaacctacggg
attttcgtctatcaggaacaggtgatgcaggccgcgcagatccttgcgggctactcgctg
ggcgatgccgaccttttgcgccgcgcgatgggtaaaaaggtgcaggccgaaatggacgcc
cagcgcctgcgcttcgtcatcggttgccgtgaggtgtcggatatcgacaaggacaaggcc
aacgaactgttcgatatcatcgacaagttcgcaggctacggcttcaataaatcgcacgct
gccgcctatgctttgctcgcctatcagaccgcgtggttcaaggcgcattatccgcatgaa
ttctatgccgcggccatgtgtttcgatatgcatcagtcggaaaaactggcggtttttgtc
gatgacatgcggcgcaatgggattgcggtggccgggccatgcctcaaccattccgaggcc
gaattcatggtcgaacagaccgccgatggtcatcaggtgcgctatgccttggccggcatc
cgcaatgtcggcgaaaaggcgatggaggtcgtcgtcgccgagcggcaggccactggtccg
ttcaaggatctggccgatctgttcacgcgtgtgccctatggctcgctcaaccggcgcatg
cttgaaggtctggcggccagcggggcgtttgacgcgctcgaacccaatcgcgccaaggtg
ctggccaatgccgacatgcttttggccgtggccgaagaggccgagcgcacccgcaccagc
ggccagcacggtctgttcggcggcgatgacgcgggggcgggcaacatccgcctgattgac
gttccggcatggagccgcagcgaccagatgaccaaggagcgcgagaatttcggcttctat
ttcgccgcccatccggtcgagcaatggcgcgccgtggccagttcgcatggcgcgcgcagc
catgccagcctgctggcgggcggggttgcggggcgcaccggggcggtgatggcggccatg
gtcgaaaacgtccagaagcgtaaaaccaagcgcggcaaggactttatcatggccgatttc
tcggaccagtcgggcaatttttcggcctcctgctttgaggaaacgctggtcgacagtttc
gtcaactgggccaaggagggcgcctgtatcctgctgacggtcgagcttgacagccccagc
cccgaggagccgccgcgcgtgaccgtgcgcggcgcgcaggcgctgtccgaggtgaaggcg
gcggccaagatgacgctgagcctcgatgtgtcgcggcccgaggtctttggcgaattggcc
acgatcctgccgcgcggcgggctcggcacggtggaggtggtgctcaaaaccggcggtgcg
caggagccgcgtctgcgtttggggcgcgatttcctgctggatggcgaattgacggatctg
atcgcggggctggagggcgtggccaatgtctcgctcaagcccacgcgggcgggcgggcat
ctgcggctggtcgcctga
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