Natronosporangium hydrolyticum: JQS43_02725
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Entry
JQS43_02725 CDS
T07914
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nhy
Natronosporangium hydrolyticum
Pathway
nhy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JQS43_02725 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhy03400
]
JQS43_02725 (ligD)
Enzymes [BR:
nhy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JQS43_02725 (ligD)
DNA repair and recombination proteins [BR:
nhy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JQS43_02725 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QSB15295
UniProt:
A0A895YGW2
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All DBs
Position
576213..578060
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AA seq
615 aa
AA seq
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MLAVTGALPGDGDWAYEMKWDGVRAIAVVEGGQVRLYARSGAEVTAAYPELAGLADAVDP
DTVLDGEIVVLDAAGRPSFAALAERMHVRDRSRAAQLAGSAPVTYMIFDLLRLAGESHLA
EPYHRRRQLLEELAGRLPASRHWLVPPSFDDGPATLAAATEHSLEGVVAKRRDSPYRPGE
RSTEWLKIKRDETGDFVIGGWRPGARRLGALLVGSPAAGGGLVYRGRVGGGISAAAERAL
LTALAPLRTDTSPFAEPLTRDDARDATWVRPELVVEVRYGQQTPDGRLRFPRFVRLRPDK
PSTQAGPPVPPALAPVSQLDRPTLVTIEGRTLELSNLDKVLYPASGYTKGEVIDYYARVA
PMLLPHLRDRALTRIRYPNGVTEASFFEKNAPAGTPSWVRTETLPVPGSSTGRETLDYVV
ADDLATVIWLANLAALELHTHQWRIGAVGPDLLVLDLDPGPPAGLTECADVALVLRDRLA
RDGLAAVAKTSGKKGMQLYCPISASQPAAVVSGYAKRVAEELARAQPRKITAQMAKRLRP
GKVFIDWSQNAAAKTTVAPYSLRAEPSPTVSTPVTWDEVAGVELGRYSPEQLLARLASYG
DLLAPLLDPGPPVPE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgctagcggtaacaggggcgctgccgggcgacggcgactgggcgtacgagatgaaatgg
gacggcgtacgcgcaatcgcggtggtcgagggtggccaggtgcggctctacgcccgttcc
ggcgccgaggtcaccgccgcgtacccggagctcgccgggttggccgacgccgtcgatccc
gacacggtgctggacggggagatagtcgtgctcgacgccgccgggcgcccctcgtttgcg
gcgctcgccgaacggatgcacgtgcgggaccgcagtcgggccgcccagctcgccgggtcc
gccccggtcacctacatgatctttgacctgctccggctcgccggcgagtcgcacctggcc
gagccctaccaccggcggcggcagctcctggaagagctggccgggcggctgcccgcgagc
cggcactggctggtcccgccgagcttcgacgacgggccggccacgctcgccgcagccacc
gaacactccctcgaaggcgtggtggccaagcggcgcgactcgccgtaccggccaggagag
cgctccaccgagtggctgaagatcaagcgggacgagaccggcgacttcgtcatcggcggg
tggcggccgggcgcccggcgactgggggcgctgctggtcggctccccggccgccggaggt
gggctcgtctaccgcggtcgggtcggcggcgggatcagcgccgccgccgaacgggccctg
ctcaccgccctggcgccgctgcgcaccgacacctcgccgtttgccgaaccgctcacccgc
gacgacgcccgggacgccacctgggtacggccggagctggtggtcgaggtgcggtacggg
cagcagacccccgacggccggctccgctttccccgcttcgtgcggctgcgcccagacaag
ccgagcacccaggccggtccgccggtgcccccggcgctggcgccggtatctcagctggat
cggccgacgctggtcacgatcgaaggccggaccctggagttatccaatctggataaggtg
ttgtatcccgcgtccgggtacaccaaaggtgaagtgatcgactattacgccagggtcgcc
ccgatgctgttgccgcatctgcgagaccgggcgctgacccggatccgctacccgaacggc
gtgaccgaggcatccttcttcgagaagaatgcccccgccggcacacccagctgggtacgc
accgaaacgctgccggtgcccggctccagcaccggccgggaaaccctcgactatgtggtc
gccgacgacctcgccaccgtgatctggctcgccaacctggccgcgctggagctgcacacc
caccagtggcggatcggcgcggtcggaccagatctgctcgtgctcgacctggatccgggc
ccgccggccgggctaaccgagtgcgccgacgtggcactggtgctgcgggaccgcctcgcc
cgcgacgggctggccgcggtcgcgaagacctccggcaagaaggggatgcaactttactgc
ccgatctcggccagccaacccgcggcggtggtctccgggtacgcaaaacgggtcgccgag
gagctggcccgggcccagccgcggaagatcaccgcgcagatggcgaagcggctgcgcccc
ggcaaggtcttcatcgactggagtcagaacgcggcggcgaagaccacggtcgcgccgtac
tcgctgcgggccgaaccatccccgaccgtctccaccccggtgacctgggacgaagtcgcc
ggcgtcgagctgggccgctactcaccggagcagctgctggcccggctggcgagctacgga
gatctgctcgccccgctgctcgaccccggcccgccggtgccggagtag
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