Natronosporangium hydrolyticum: JQS43_22625
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Entry
JQS43_22625 CDS
T07914
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nhy
Natronosporangium hydrolyticum
Pathway
nhy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JQS43_22625 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nhy03400
]
JQS43_22625 (mfd)
Enzymes [BR:
nhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JQS43_22625 (mfd)
DNA repair and recombination proteins [BR:
nhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JQS43_22625 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QSB14273
UniProt:
A0A895YFT5
LinkDB
All DBs
Position
complement(5025115..5028768)
Genome browser
AA seq
1217 aa
AA seq
DB search
MTLVGLQAAALPTLSRLREVAADPAADPLDLTGPSALRPLVTAAAAASVDRGGAGRPVLV
VTATSREAEELGAAVAELIPGDQVEVYPAWETLPHERLSPRSDTVGRRLAVLRRLAHPGD
QPVRVVVAPVRSVLQPQVKGLGELVPVTLRPGDTVELSELAQRLTDLAYARVDLVTKRGE
YAVRGGILDIFPPTAEHPLRVELWGDEVDEIRSFAVADQRTLETESELTAPPCRELLLTP
EVRARAAALAQQQPALAEICERLAEGIPVEGMESLAPALLAPAGDGDGGGLELLLHTLPR
QTLVLLCDPERIRTRAHDLVRTSEEFREASWAAAATGGTAPIDLGEVAFRSLAQVRAVAG
ELGFSWWTMAPFGIVEEGEETSPTLGDVSELGESLRLPAESVPLYHGDTARLIQDVKGWL
ADGAAVALVFAGHGPAQRAGEVLRDAGFGVQLVDSLEQPPTPGAVTITTAALSVGFALTG
PPPLVVLTGDDITSGRGGAGGGQLRRMPTRRRKTIDPLELRAGDLVVHEQHGIGRYVELV
QRAVNGAQREYVVIAYAAGKRGQPEDRLFVPTDALDQLSRYVGGENPALHKLGGSEWQKA
KARARKAVREIAAQLIQLYAARKASKGHAFGPDTPWQRELEDAFPWVETPDQLSAIDEVK
ADMRQSTPMDRLICGDVGFGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHFNTFTERM
SQFPVELRQLSRFATTAETNQTLTKLAEGGVDIVVGTHRLLQPSTRFKQLGLVIVDEEQR
FGVEHKEYLKSLRATVDVLTLSATPIPRTLEMAVTGIREMSTIATPPEERHPVLTYVGAY
KEKQVAAAIHRELLRDGQVFYVHNRVESIEKAARKLRELVPEARIAVAHGQMGEATLEKV
MVGFWQREYDVLVCTTIVESGLDIPNANTLIVERADLLGLSQLHQIRGRVGRGRERAYSY
FLFPPEKPLTEQAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSGHIEGVGFD
LYVRMVGEAVQRFKGEETGEEEPAAEVKIDLPVDAHLPHEYIGVERLRLEAYRKLATAAT
ADELTEVVAELDDRYGTPPEPVANLVAVARFRLLARAYGLTEVSLQGRHIRFAPLTLPDS
KQLRLKRYHPDAVYKPAVATVSLPRPATKRVGGQPLRDTALLDWCAELLTTVLGEPPAGA
AAGGAAAPPAPSAPART
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcgtaggtctccaagctgccgcgctgcctacgctctcccggctgcgggaagtc
gccgccgaccccgccgccgacccgctggacctcaccggcccatccgcgctgcgcccactg
gtcaccgccgcggcggccgccagcgtcgaccggggtggggccggccggccggtgctggtg
gtgaccgccacctcccgggaagctgaggagctcggcgcggcggtggcggagctgatcccg
ggcgaccaggtggaggtctatccggcgtgggagacgctgccgcatgagcggctctcaccc
cgcagcgacaccgtggggcgccggctggcggtgctgcgccggctcgcccacccgggcgac
cagccggtacgggtggtggtggcgccggtccggtcggtgctgcagccgcaggtgaagggg
ctcggcgagctagtgccggtgacgctgcggccgggcgacaccgtcgagctgtcggaattg
gcgcagcgactcaccgacctggcgtacgcccgggtcgacctggtcaccaagcgcggcgag
tacgccgtacggggcggcatcctcgacatcttcccgccgaccgcggagcatccactgcgg
gtggagctgtggggcgacgaggtggacgagatccgcagcttcgccgtcgccgaccagcgg
accctggagaccgaatccgaactgaccgcgccgccgtgccgggagctgctgctcaccccg
gaggtgcgggctcgtgccgcagcgctggcgcagcagcagccggcgctggccgagatctgc
gaacggctcgccgaggggatcccggtggaggggatggagtcgttggccccggcgctgctc
gcgccggccggcgacggcgacgggggcgggctggagctgttgctgcacacgctgccccgg
cagacgctggtgctgttgtgcgacccggagcggatccgcacccgggcccatgacctggtc
cggaccagcgaggagttccgggaggcgagctgggcggcggcggcgaccggcggcaccgcc
ccgatcgatctgggggaggtggcgttccggtcgctggcgcaggtccgggccgtcgctggg
gagctgggtttcagctggtggacgatggcgccgttcggcatcgtcgaggagggggaggag
acatcgccgacccttggcgacgtcagcgagttgggggagagcctgcggctgccggccgag
tcggtgccgctctaccacggtgacaccgcccgactgatccaggacgtcaaggggtggctg
gccgacggggccgcggtggcgttggtcttcgccgggcacgggccggcgcagcgggcgggg
gaggtgctccgcgacgccggcttcggggtgcagctggtcgattcgctcgaacagccgccg
acgcccggtgcggtcacgatcaccactgctgcgctcagcgtcggcttcgcgctgaccggc
ccgccgccgctggtggtgctcaccggcgacgacatcaccagcggccggggtggggcgggc
ggcggtcagctgcgccggatgccgacccggcgccgcaagaccatcgacccgctggagctg
cgcgccggtgacctggtggtgcatgaacagcacggcatcggccgctatgtggagttggtg
cagcgggcggtcaacggggcccagcgcgaatatgtcgtgatcgcgtacgcggcgggcaag
cgggggcagccggaggaccggttgttcgtccccaccgacgcacttgatcagctgtcccgt
tacgtcgggggcgagaacccggcgctgcacaagctgggcgggtcggagtggcagaaggcg
aaggcccgggcccgcaaggcggtccgggagatcgctgcccaactgatccagctgtacgcg
gcccggaaggcgagcaaggggcacgcgttcgggccggacacgccgtggcagcgggagctg
gaggacgcgttcccgtgggtggagacgccggaccagctctcggcgatcgacgaggtgaag
gccgacatgcggcagtcgacgccgatggaccggctgatctgcggcgacgtcggcttcggc
aagaccgagatcgccgtccgggcggcgttcaaggcggtgcaggacggcaaacaggtggcg
gtgctggtgcccaccacgctgctggcgcagcagcacttcaacaccttcaccgaacggatg
agccagttcccggtggagctgcggcagctgtcgcggttcgcgaccaccgccgagaccaac
cagactttgaccaagctcgccgagggcggcgtcgacatcgtggtcggcacccaccggctg
ctgcagccgagcacccggttcaagcagctcggcctggtcatcgtcgacgaagagcagcgg
ttcggggtggagcacaaagaatatctgaaatcgcttcgtgccactgtggacgtgctgacg
ctctcggccacgccgattccgcgtaccttggagatggcggtcaccgggatccgcgaaatg
tcgacgatcgccaccccaccggaggagcggcatccggtcctcacctatgtcggagcatac
aaagagaagcaggtcgccgccgcgatccatcgtgagctgctccgcgacggccaggtcttc
tacgtgcacaaccgggtggagtcgatcgagaaggccgcgcgcaagctgcgggagctggtg
cccgaggcgcggatcgcggtggcgcacgggcagatgggcgaggccaccctggagaaggtg
atggtcggcttctggcagcgcgagtacgacgtgctggtctgcaccaccatcgtcgagtcc
ggtctggacatcccgaacgccaacacgctgatcgtggagcgggcggacctgctcgggctc
tcgcagctgcaccagatccgggggcgggtcggccggggccgcgagcgggcctactcgtac
ttcctgttcccgccggagaagccgctcaccgagcaggcacacgaacggctcgcgaccatc
gcccagcacaccgaactcggcgccgggatgtatgtggcgatgaaggacctggagattcgc
ggcgccgggaacctactcggcggtgagcaatccggccacatcgaaggtgtgggtttcgac
ctctacgtccggatggtcggcgaagcggtgcagcggttcaagggcgaagagaccggcgaa
gaggagcccgccgccgaggtcaagatcgacctgccggtcgacgcgcacctgccgcacgag
tacatcggggtggagcggctgcggctggaggcataccgcaagctcgccaccgctgccacc
gccgacgagctgaccgaggtcgtcgccgagctggacgaccggtacggcaccccgccggag
ccggtggcgaacctggtggcggtagcgcggttccggttgctcgcccgcgcctacgggctg
accgaggtgtccctgcaagggcggcacatccggttcgcgccgctgaccctgcccgactcc
aagcagctgcggctcaagcggtaccacccggacgcggtctacaagccggcggtggcgacg
gtgtcgctgccccgaccggccaccaaacgggtcggtgggcagccgctgcgcgacaccgcc
ctgctcgactggtgcgcggagctgctcaccaccgtgctcggggagccgccggcgggcgcc
gccgctggcggcgccgccgcgccacccgcaccgagcgcacccgcccgaacatga
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