Niabella ginsenosidivorans: A8C56_09920
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Entry
A8C56_09920 CDS
T04418
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nia
Niabella ginsenosidivorans
Pathway
nia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8C56_09920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nia03019
]
A8C56_09920
03009 Ribosome biogenesis [BR:
nia03009
]
A8C56_09920
Enzymes [BR:
nia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A8C56_09920
Messenger RNA biogenesis [BR:
nia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A8C56_09920
Ribosome biogenesis [BR:
nia03009
]
Prokaryotic type
rRNA helicases
A8C56_09920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
YwpF
SNF2-rel_dom
AAA_22
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
ANH83830
UniProt:
A0A1A9IAP5
LinkDB
All DBs
Position
complement(2385681..2387330)
Genome browser
AA seq
549 aa
AA seq
DB search
MVTFESLGIEEGLLQSLQEIGFKTPTPIQEQAIPVLLQGTKDFIGLAQTGTGKTAAFGLP
LLQLIDRSFPSPQALIICPTRELCLQIASDLNAFKQKNAAIHITAVYGGTAISQQIREIK
RGTHIVVATPGRLIDLIERKAINLNDIHYVVLDEADEMLNMGFKDDIEFILKETPNRQST
WLFSATMPKEIRQVSKRYMEQPHEITVGKANSVNVNIAHQYYLTQHINRYETLKRIIDFN
PGLYGIIFTRTKADAQQITEQLIREGYDIEALHGDLTQAQRDKVMARFREKSLELLIATD
VAARGIDVQGITHVINYELPDDTEVYTHRSGRTGRAGLSGISISIITPREMYRLHQIEKL
VNTRFNKIDIPSGKDVCRKQFFHFIDKMLNADISNGEYEAYVPVLKEKFESVTKEEVLQR
VAALEFDRFLKYYENSVDLNLREDRKGDRKEGRSPARESRGGRSGQYQRLFVNLGTKDGF
YKASFLQFILDMSRLSKENLGRIDMKEMNSWVEVDAASARIMIKALDGKNYRGRRIRMND
ADSGGGRRR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
gtggttacatttgaatcgttgggtatagaggaaggtttacttcaatctttacaggaaatc
gggtttaagacgcccacccccatacaggagcaggcaatacctgttctattacagggaaca
aaagattttatagggctggcacaaaccggcactggtaaaacggctgcctttggtttgccg
cttttgcagctgatcgacagatcatttccatcgcctcaggcgttaattatttgccctaca
agggaattgtgccttcagattgccagcgatctgaacgcatttaaacaaaaaaatgcagcg
atacatattactgctgtttatggtggcacggctatcagccagcagatccgtgaaataaag
cggggtactcatattgttgtggctactcccggccgtttgattgacctgattgaacgcaaa
gcgatcaaccttaatgatattcattatgtggtgctggatgaggcagatgagatgctgaac
atgggctttaaggacgatattgaattcatattaaaagagaccccaaaccgccagagcacc
tggctgttcagcgctaccatgcccaaagagatccggcaggtaagcaagcggtatatggag
cagccccatgaaataaccgttggcaaggccaattccgtaaacgtgaacattgcgcatcag
tattatttaacacagcatatcaaccgttatgaaacattaaaacggatcattgattttaat
ccgggtttatatggcattatttttacgcgaaccaaagccgatgcccagcagattacagaa
caactgatccgggaaggctatgatattgaagcgctacatggtgatctgacgcaggcacag
cgcgataaggtgatggcacgcttccgtgaaaaatcgctggagttgctgattgcaacagac
gtggcagcgcgcggcattgatgtacagggtattacccatgtaattaattatgagctgccg
gatgatacagaggtatatacgcaccggagcggcagaacaggcagagccgggctgagcggt
atttccatatctattattacacccagggaaatgtaccggctgcaccagattgagaagctg
gtcaacacccgctttaataaaattgatattccttccgggaaagatgtttgccggaaacaa
tttttccattttattgataaaatgctgaatgcagacatcagcaatggcgaatatgaagcc
tatgttccggtattaaaggaaaaatttgaatcggttaccaaagaagaggtattacaaagg
gtagctgccctggaatttgaccgctttttaaaatattatgaaaattcagtggatctgaac
ctgcgggaagaccgcaagggggaccggaaagagggcagaagcccggcgcgtgagagccgt
ggcggccgcagcgggcagtaccagcggctgtttgtgaacctgggaaccaaggacggtttc
tataaagccagtttcctgcagtttattctggacatgagccgcctgagcaaggaaaacctt
ggccgtattgacatgaaggaaatgaacagttgggtggaagtggacgccgcttctgcccgg
atcatgatcaaggccctggatggcaagaattatcgcggcaggcggatccggatgaatgac
gccgatagtggcggtggcagaagaagataa
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