Niabella ginsenosidivorans: A8C56_20930
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Entry
A8C56_20930 CDS
T04418
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nia
Niabella ginsenosidivorans
Brite
KEGG Orthology (KO) [BR:
nia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nia03016
]
A8C56_20930
Enzymes [BR:
nia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A8C56_20930
Transfer RNA biogenesis [BR:
nia03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A8C56_20930
Prokaryotic type
tRNA splicing ligases
A8C56_20930
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ANH83115
UniProt:
A0A1A9I701
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All DBs
Position
4968270..4969721
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AA seq
483 aa
AA seq
DB search
MSKPSLTGKELRAIGYPEGPVISVAMSTMQKAYRHESKEYALNILKELLAAPHDYVSDKT
LGIIAQQLLPKPAAMEGADISLNQTGIHFNIFGQEHIEEGALHQMYQAAKLPVAVAGALM
PDAHSGYGLPIGGVLATDNAVIPYGVGVDIGCRMCLSIFDLPPKELTDREAFFIRELGAA
TLFGSGAQFDRSPDHAVMENRLFYEMPLLKRLHGRAWKQLGSSGSGNHFAEFGIVTITEK
DEALGLDAGSYIGFLTHSGSRALGATIANHYTKLAISKRRLPQEAKNLAWLGLDEEAGAE
YWLAMNLAGDYASACHHVIHDKIAKQLGRKPVKQVENHHNFAWKELLDGKEVIVHRKGAT
PAGKEVLGIIPGSMTADGFIVKGKGTTAAVNSASHGAGRKMSRTRAIQSVTDKQFRDELK
KFGVKLLGGGLDESPFAYKDIHTVMQSQKALVAIVGSFTPKIVKMDGAAHRSWKKKKDET
VAE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaccaagcttaacaggaaaagaactaagggcaataggatacccggaaggaccg
gtgatctctgttgctatgagcaccatgcaaaaagcatacaggcatgaaagcaaagagtat
gcgctgaatattttaaaagagctattagctgctccgcatgattatgtttcagataaaacc
ctgggcattattgcccaacagctattgcccaaaccggcagctatggaaggcgcggacata
tcactgaatcaaaccggtatccactttaatatattcggacaggagcatattgaagaagga
gccctgcaccagatgtaccaggcggcaaagctgcctgtagcagtggccggcgcgcttatg
cctgatgcgcatagcggctacgggctacccattggcggcgtactggcaaccgataatgcg
gtcatcccttacggcgtgggcgtggacattggctgccggatgtgcctgagtatttttgac
ctgcccccaaaagagctgacggaccgcgaagccttttttatacgcgaactgggcgccgcc
acattatttggcagcggtgcgcagtttgaccggtctcctgatcatgcagtaatggaaaac
agattgttttacgaaatgcccttattaaaaaggctgcacgggcgcgcctggaagcagtta
ggcagctccggttccggaaatcactttgctgaatttggtattgtaaccattacagaaaaa
gacgaagcccttgggctggatgcgggcagctatatcggcttcttgacccactccggatcc
cgggccttaggcgctaccattgccaatcattacacaaagctggccatcagcaaacgccgc
ctgccacaggaggcaaaaaaccttgcctggctggggctggatgaagaagcaggagcagaa
tactggctggccatgaacctggccggtgattatgcaagtgcctgccatcatgtgatccat
gataaaattgcaaaacaactggggcgtaaacctgtaaagcaggtagaaaaccatcacaat
tttgcatggaaggaattgttggatggcaaagaggttattgtgcaccgtaaaggcgccaca
cctgccggtaaagaggtactgggcattataccgggcagcatgacagcggatggctttatt
gtaaaaggcaaaggcacaaccgcagcggtgaactcagcatcgcacggggccggccgcaaa
atgagccgtacccgggctattcaatcagttaccgataaacagttcagggatgagctgaaa
aaatttggggtgaagctgctgggcggcgggttggatgaatcgccctttgcatacaaggat
atacacaccgttatgcaatcacaaaaagcattggtagccattgtaggttcttttacacca
aaaattgtaaaaatggatggcgccgcgcaccggagctggaagaaaaagaaagatgaaact
gtggctgaatag
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