Niabella ginsenosidivorans: A8C56_21505
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Entry
A8C56_21505 CDS
T04418
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nia
Niabella ginsenosidivorans
Pathway
nia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A8C56_21505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nia03019
]
A8C56_21505
03400 DNA repair and recombination proteins [BR:
nia03400
]
A8C56_21505
Enzymes [BR:
nia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A8C56_21505
Messenger RNA biogenesis [BR:
nia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A8C56_21505
DNA repair and recombination proteins [BR:
nia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A8C56_21505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ-1-like_HTH
RecQ_Zn_bind
HRDC
ResIII
SWI2_SNF2
HTH_40
Motif
Other DBs
NCBI-ProteinID:
ANH84128
UniProt:
A0A1A9I8W9
LinkDB
All DBs
Position
complement(5090927..5093188)
Genome browser
AA seq
753 aa
AA seq
DB search
MKSEKKATKTKQPAVKSTKKTKGGIDLHGELLKNFGFQKFKGKQEAIIESLLSGKDTFVI
MPTGGGKSLCYQLPAVIMEGVAIIVSPLIALMKNQVDLVRGYNSNDEVAHFLNSTLTKKE
IKEVHDDLLSGKTKLLYVAPETLTKQENLTFFSDLNISFFAVDEAHCISEWGHDFRPEYR
RLREMMNQINPNAAVIALTATATPKVQSDIIKNLGLKDANIFISSFNRDNLYYEIVPKIS
KKQTNESIVRFIKSMKNKSGIIYTLNRKTTEELADILMANGIKAVAYHAGLDSKLRAERQ
DQFLNEDVQVIVATIAFGMGIDKPDIRFVIHYNISKSIENYYQETGRAGRDGLEGKCLLY
YSHKDVSKLEHLMRDKPLSEREVGAQLINETVAYAESGVCRRKVILSYFGEQYDVENCGQ
CDNCKHPKERLEAKEQAVLVLKTIKELDERFATDYTVNILIGKLTPQVKMFRHEGLSSFG
AGKDHDSLFWNSLIRQMLLENLLKKDIEEYGVLKLTPEGTAFLKKPKAFTIVLNNKFEEA
WDDDEAPAAEDGGGAATDQQLFEMLKELRQKEARRKSLPPFVIFLENSLMDMATLYPTTI
AELEKCQGVSKGKAIRYGKPFVDLIARYVEDNNIQKPDDFVMKSVVNKSGNKVYIIQQTD
KKIPLETIAKNKGWKIDELLEEMETIAASGTKLNLGYAIDEMLDEEDQDEIIEYFKSCET
SSLQLAQEELAEYDFNWEQLKIMRIRFLSEYGM
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaagtgaaaagaaagctaccaaaacaaaacaaccggcagtaaagagtacgaaaaaa
acaaaaggagggatcgatttacatggagagctgcttaaaaactttgggtttcagaaattt
aaaggaaaacaggaagccattattgaatcacttttatcaggaaaagacacttttgttatt
atgcctacgggaggtggtaaaagcctttgctaccaacttccggcagtgattatggaagga
gttgccatcatcgtttctccccttattgcgttgatgaagaaccaggtagaccttgtaagg
ggctataacagcaatgatgaggtagcgcactttttaaattccacattaacaaaaaaagaa
ataaaggaagtgcatgatgacctgctgtcaggtaaaacaaaattattatatgttgcaccg
gaaacactgaccaaacaggaaaacctgacttttttcagtgatctgaatatttctttcttt
gccgtggatgaggcacactgtatttcagaatgggggcatgatttccggccggaataccgt
cgcctgcgcgaaatgatgaatcagatcaacccgaacgcggccgttattgccttaaccgcc
accgctacccccaaagtgcagagcgatataattaagaacctgggattaaaggatgccaat
attttcatatcttcctttaaccgggacaatctttactatgagatcgtgccaaagatcagt
aagaagcagaccaatgaaagtattgtccgctttatcaaaagcatgaaaaacaaaagcggc
attatatacaccttaaacaggaaaaccactgaggagctggctgatatattgatggccaac
ggcattaaagcggttgcttaccatgccggcctcgacagcaagctccgtgcagagcgccag
gaccagtttttgaatgaggatgtacaggtaattgtggctaccattgcgtttggaatgggt
attgataagccggatatccgttttgttatccattacaatatctccaaatcaatagaaaat
tattatcaggaaaccgggcgcgccgggcgcgatgggctggaaggaaaatgcttattatat
tattcccataaggatgtgagcaagctggagcacctgatgcgcgataagccgttaagcgag
cgggaggtaggggcacagctgatcaatgaaaccgttgcctatgctgaaagcggcgtttgc
cggcgtaaagtgatcctcagctattttggggaacaatatgatgtggagaactgcggacaa
tgcgataactgcaagcaccccaaagaacgcctggaggcaaaagaacaggcggtgctggtc
ttaaaaaccattaaagaactggatgagcgttttgcaacagactatactgttaatatactg
atagggaaacttactccgcaggtaaaaatgttccggcatgaaggcctttccagctttggg
gcaggcaaagatcacgattccctgttctggaattctttgatccgccagatgctgctggag
aacctgctgaaaaaagatattgaagaatatggcgtactgaagctgacgccggaaggaacc
gcgtttttgaaaaaacccaaagccttcacgattgtgctgaacaataaatttgaggaagcc
tgggacgatgatgaagcaccagccgctgaggatgggggtggagcagcaacggaccagcag
ctatttgaaatgctgaaggaactgcggcaaaaggaagcccggagaaaaagcctgcctcct
tttgtaatttttctggaaaattcgctgatggatatggccacgctttatcctacaaccatt
gcagagctggaaaaatgccagggagtgagcaagggaaaggccatccgctatggaaagccg
tttgttgacctgattgcgcgttatgtcgaagacaataacattcagaagccggatgatttt
gtaatgaagagcgtggtgaacaaaagcgggaataaggtctacatcatccagcaaaccgac
aaaaaaatccccctggaaaccattgcaaaaaataaaggctggaaaattgatgagctgctg
gaagaaatggaaactattgcagcaagcggcaccaaactgaacttagggtatgccattgac
gaaatgctggacgaagaagaccaggatgagatcattgaatactttaaaagctgcgaaacc
tcttctttgcaactggcccaggaagagctggccgaatatgattttaactgggagcaactg
aaaataatgagaatacggtttttaagtgaatatggtatgtag
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