KEGG   Niallia sp. Kr1: Q5760_24500
Entry
Q5760_24500       CDS       T11525                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
niak  Niallia sp. Kr1
Pathway
niak03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:niak00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Q5760_24500 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:niak03021]
    Q5760_24500 (rho)
   03019 Messenger RNA biogenesis [BR:niak03019]
    Q5760_24500 (rho)
Transcription machinery [BR:niak03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Q5760_24500 (rho)
Messenger RNA biogenesis [BR:niak03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Q5760_24500 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N S1CSD-TOTE-2 OB_RNB AAA_22 AAA ATPase_2
Other DBs
NCBI-ProteinID: XTP54391
LinkDB
Position
complement(4963558..4964823)
AA seq 421 aa
MGLNISSLENMKLKELYELAREYKVSYYSKLTKKELIFAILKARAEQEGYFFMEGVLEII
QSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAV
NGDDPESSKERVHFPALTPLYPDRQMKLETTPNKISTRIMDILAPVGFGQRGLIVAPPKA
GKTMLIKEIANSVTINHPEAELIVLLIDERPEEVTDIERSVQGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRALAERRIFPAIDIRR
SGTRKEELLIPKDHLDLLWAIRKSMSDSPDFSEKFLRKLKHTKSNEEFFAHLNDEMKAKR
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgggattaaatatatcaagtttagagaatatgaagttgaaagagctttacgaattagct
cgtgagtataaggtttcttattatagtaaattaaccaaaaaagaattaatctttgccatc
ttaaaagcacgggctgaacaggaagggtacttttttatggaaggtgtcctcgaaattatt
caatctgaaggcttcggctttttaagacctatcaattattcaccaagttcagaggatatt
tatatatcagcatcacaaattcgacgctttgacttacgtaatggggataaagtttctgga
aaggttcgtcctccaaaagaaaatgaacgttattttggattgctccaagtagaagctgtt
aatggtgatgaccctgagtcatcaaaagaacgtgtacatttcccggcgttaactccttta
tatccagatcgccaaatgaaattggaaactactccgaataaaatctcaacaagaattatg
gatattttagctccagtgggatttggtcagcgtggtttaattgttgcccctccaaaggcc
ggtaaaacgatgctgattaaagaaatcgctaacagcgttacgattaaccatcctgaggca
gaattgattgtccttcttattgatgaacgacctgaagaggtaaccgatattgagcgctcc
gttcagggggacgtggtgagttcaacatttgatgaagtacctgagaaccatattaaagtg
gctgaattggttcttgagcgtgcgatgcgtcttgttgaacacaagcgtgatgtcgtgatt
ttaatggacagtatcacaagactggctcgtgcctataaccttgtcattccgccaagtgga
cgtacattatcaggtggtattgacccagcagcctttcaccgtccaaaacggttcttcggg
gccgcgcgtaatattgaagagggtggatctttaacgattttagccaccgcgcttgttgat
acaggttcacgtatggatgatgtcatttacgaggaatttaaagggacaggcaatatggaa
cttcatttagaccgtgccttggctgagagaagaattttcccagcaattgatattcgtcgc
tcaggcacaagaaaagaagaattgctcattccaaaagatcatttggatctcctttgggcc
attcgaaagtccatgtcagattcacctgatttctcagagaaattcctacgtaagttaaag
catactaaatcaaacgaagagttttttgctcatctaaatgatgaaatgaaggcaaaacga
tcttaa

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