Nibribacter ruber: GU926_01605
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Entry
GU926_01605 CDS
T06388
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nib
Nibribacter ruber
Brite
KEGG Orthology (KO) [BR:
nib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nib03032
]
GU926_01605 (topA)
03400 DNA repair and recombination proteins [BR:
nib03400
]
GU926_01605 (topA)
Enzymes [BR:
nib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GU926_01605 (topA)
DNA replication proteins [BR:
nib03032
]
Prokaryotic type
DNA Topoisomerases
GU926_01605 (topA)
DNA repair and recombination proteins [BR:
nib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GU926_01605 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
QHL86212
UniProt:
A0A6P1NZZ8
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All DBs
Position
complement(369235..371688)
Genome browser
AA seq
817 aa
AA seq
DB search
MIKNLVIVESPAKAKTIEGYLGKDFVVKSSFGHVRDLPKDNNAIDIKNGFKPTYVVSPDK
REVISSLKKLAKEAETVWLASDEDREGEAISWHLAEALNLNEAKTRRIVFREITKNAILN
AIDNPRTIDINLVNAQQARRVLDRLVGFELSPVLWKKIKTGLSAGRVQSVAVRFVVERER
EIERFKSESAFKVVAIFDVAGKRLEAELNTRFKTREQAEDFLNRNIGASYTIDSLEKKPT
KRSPAAPFTTSTLQQEASRKLYFSVAQTMQVAQRLYEAGKISYMRTDSVNLSQDAMAAAA
AEIARSFGDNFVKTRQYKTKNKSAQEAHESIRPTDFAALKASDDRNEQRLYDLIRKRAIA
SQMADAEIEKTTAVISISGQPEKLVATGEVVKFEGFLKVYAESTDDEELSDEETQGMLPP
LKEGQTLNLQRLQATERYSRPAPRYTEASLVKKLEEMGIGRPSTYAPTISTIQKRGYVEK
DNREGKERPYQILSLENGEIKAMTKTEMAGAEKAKLFPTDIAMVVTDFLVAHFPSIIDYS
FTAKVEEEFDQIAMGNKEWDKMLDVFYSSFHGTIEASADIERASVSGARELGLDPVSGKM
MVAKLGRFGPYVQLGEENEETGEKPVYASLRKGMFLESITVEQAQELFKLPRVVGTYEEK
DMKAAIGRFGPYIQHNSKFYSLPKTMDPLLISEAEAIELIDAKRKSDAEKMIKTFPENPE
VTVLNGRFGPYICVGKKNVKIPKGQEPAELTLEQCLELAANTPDKPARGGFKKKADPAAA
ADAPKKTAAKKPAAKKAPAKKATGTTAKKAAPKKKAS
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgataaagaacttagtaattgtggagtccccggccaaagccaagaccattgaagggtac
ctgggcaaagatttcgtggttaaatctagcttcgggcacgtgcgggacctccccaaggac
aacaatgccatagatatcaaaaacggcttcaaacccacctacgtggtgtctccagacaag
cgcgaagtcatctccagtctgaaaaagctcgccaaggaggccgaaacggtttggctggca
tcggatgaggaccgtgagggagaagccatttcttggcatctggccgaagccctgaacctg
aatgaggccaagacgcgccgcatcgtgttccgggagattaccaagaacgccatcctcaac
gccattgacaacccccgcaccatagacatcaacctggtaaacgctcagcaagcaagacgc
gtgctggaccgtctggtgggttttgaattgagtccggtgctttggaagaagataaaaacc
ggtctatctgccgggcgtgttcaatctgtagcggtacgttttgtagtagagcgcgaacgt
gagattgagcgcttcaagtctgagtctgcctttaaagtggtggccatttttgacgtggcc
ggcaagcgcctggaggctgagttgaacacccgctttaaaacccgtgagcaggccgaggac
ttcttgaaccgcaacattggggcttcttatactattgacagcctagagaaaaagccaacc
aagcgtagcccagccgctccgtttaccacgtctaccctacagcaggaagccagccgcaag
ctgtatttctcggtggcccagaccatgcaagtggcccaacgcctgtacgaagccggtaag
atttcctacatgcgtaccgactccgtgaacttgtcacaggacgctatggccgctgctgcc
gcagagattgcgcgcagctttggcgacaacttcgtcaaaaccagacaatacaaaaccaaa
aacaaatcagcgcaggaggcccacgaatccatccggcctacagactttgccgcgctcaaa
gccagcgatgaccgcaacgagcaacgcctgtatgatttaatcagaaagcgcgccattgcc
tcgcagatggccgatgctgagattgagaaaaccaccgccgtcatctccatctccggtcaa
ccagaaaagctggtagctactggtgaagtggtgaagtttgaaggtttcttgaaagtgtat
gctgagtctaccgatgacgaggaactaagcgacgaagaaacccagggcatgcttcctcct
ttgaaagaaggtcaaactttgaacttgcaacgcctgcaggccaccgagcgctacagccgt
ccggcgccacgttacacagaagctagtttggtgaagaagttagaggaaatgggtattggt
agaccatctacctacgcgcctaccatctctaccatccagaaacgcggctacgtagaaaaa
gacaatagagaaggcaaagaaagaccataccaaatcctgtctttggagaacggcgagatc
aaggccatgactaaaaccgagatggcaggcgccgagaaagccaagctcttccctacagac
attgccatggtggtgaccgactttctagtagcccacttccccagcatcattgactattct
ttcaccgccaaggtagaggaagagtttgaccagattgccatgggtaacaaggagtgggac
aagatgttagatgtattctactcaagtttccatggaaccattgaagcctctgcagacatt
gaacgcgccagcgtaagcggagcccgtgaactgggccttgaccctgtctctggcaagatg
atggtagccaagttaggacgcttcgggccgtacgtgcagctaggtgaggagaacgaggaa
accggcgaaaaaccggtttatgccagccttaggaaaggaatgttcctggagtctattacg
gtagagcaggcccaggaattgttcaaattaccgcgcgtggtgggcacctatgaagagaag
gacatgaaagccgccatcgggcgtttcgggccttatattcagcacaacagtaagttctac
tcgctgcccaaaaccatggatcctttgctcatctctgaggccgaagccattgagctgatt
gacgccaaacgcaaatcggacgccgagaagatgatcaaaaccttccccgaaaatccagag
gtgaccgtcttgaacggacgctttgggccgtacatatgcgtgggcaaaaagaacgtcaaa
atcccgaagggacaggaaccggcagaacttaccttagagcaatgcctggaactggcggcc
aacacccccgataagccagcccgaggcggtttcaagaagaaagctgacccagccgcggcc
gcagatgctccaaagaagaccgccgccaaaaagccagcggccaagaaagcgcctgctaaa
aaagctaccggcaccaccgctaaaaaggcggctcctaagaagaaggccagctag
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