Nibribacter ruber: GU926_01745
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Entry
GU926_01745 CDS
T06388
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nib
Nibribacter ruber
Pathway
nib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GU926_01745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nib03019
]
GU926_01745
03009 Ribosome biogenesis [BR:
nib03009
]
GU926_01745
Enzymes [BR:
nib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GU926_01745
Messenger RNA biogenesis [BR:
nib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GU926_01745
Ribosome biogenesis [BR:
nib03009
]
Prokaryotic type
rRNA helicases
GU926_01745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QHL86235
UniProt:
A0A6P1NWR2
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All DBs
Position
408932..410845
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AA seq
637 aa
AA seq
DB search
MERIKFQELSLSEEMQRAIVDLGYEEASPIQTAAIPVLLEGRDVIGQAQTGTGKTAAFAI
PTIEGIDPNNREVQALILCPTRELAIQVAEEILKLCKYKKGISVVPIYGGQPYDRQLRAL
KQGVQIVIGTPGRVMDHIERGTLRLETTKTIILDEADEMLDMGFREDIEFVLTKMPETRQ
TVFFSATMSKPIMELTRKYQTNPEIVKVTHKELTVTNIEQVYFEVRSSGKMEVTTRLIDM
YNFKVVIIFCNTKRMVDELVSNLQARGYFADGLHGDLNQNQRTNVMNKFKAGTLEILVAT
DVAARGIDVDNVEAVINYDLPQDEENYVHRIGRTGRAGKSGKAFSYVAGRDLYKLRDIER
FTKAKIVRQPVPTYEDVAEVRTTLVLDQVKEVIEKGGLAKHVVKVERLIAQDFNTLDIAA
ALLKLLMKDTKTKEKGAEANETKGGPKPGFDRLFVTLGKKDRLHPKDLVDIMTDHTSIPG
GKVGDIDLYDRFSFVEVPTEYTQEIIERLGVTEINGMTVKFQKAEKKSMDPAEGGRELQE
LEDRPRKFYDKPFGGGGDRGGSRGGFGGDRGGYGGGNRGGGDRGGSRGGYGGGDRDRGGD
RGGSRGGDRGGSRFGGGDRDRGGNGGGGFRERKRRDF
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaattaaattccaggagctttcgctatcggaagagatgcaacgtgctatcgtt
gacttaggctatgaagaagcctctcctattcaaactgccgccattcctgtgttgctggaa
ggccgcgacgtgattggccaggcgcagactggtactggcaagactgccgctttcgccatc
cctaccattgaaggcattgaccctaacaaccgcgaggtacaggcgttgattctttgtcca
acccgtgagttggcaattcaggtggcagaagagattctaaaactttgtaagtacaaaaaa
ggcatcagcgtagtgcctatctatggtggtcagccctatgaccgtcagttacgcgccctt
aagcaaggggtacaaatcgtgatcgggacgcctggtcgtgtaatggaccacattgaaaga
ggaacccttagactagagaccaccaaaaccatcatcctggatgaggcagatgagatgttg
gacatgggctttagagaagatattgagtttgtcttgaccaagatgccagaaacccgccag
acggtgttcttctcagcaactatgagcaagccaatcatggagcttacgcgcaagtaccag
accaatccagagattgtgaaggtaacgcacaaagagctgaccgtgaccaacattgagcag
gtttattttgaagtgcgtagctcaggtaagatggaggtaactactcgtcttattgacatg
tataactttaaagtggtgatcatcttctgtaacaccaagcggatggtggatgagttggtg
agcaacctacaggcccgcggctattttgctgacggtttgcacggtgacttaaaccagaac
cagcgtaccaacgtgatgaacaagttcaaagccggtactttggagattctagtagccaca
gacgttgccgcccgcggtattgacgtggacaacgtagaagcggtaatcaactatgactta
ccacaagacgaagaaaactacgtgcaccgtattggccgtacaggccgtgccggtaaatct
ggtaaagccttctcttacgtagcgggccgtgacctttacaaactgcgtgacattgagcgc
ttcaccaaagcaaagattgttcgtcagccggtgcctacatatgaagacgtagccgaagtg
cgcactaccctggtattggaccaagtgaaggaagtgattgagaaaggtggccttgctaag
catgtggtgaaagtagagcgcctgattgctcaggactttaacaccttggacattgcagct
gctttgttgaagctgttgatgaaagacactaaaaccaaggagaaaggcgccgaggccaac
gaaaccaaaggcggacctaagcctggctttgaccgtctgtttgtgaccttgggcaaaaaa
gaccgtctgcaccctaaagatctggtagacatcatgaccgaccacaccagcattcctggt
ggcaaggttggtgacattgatttgtatgaccgcttctcttttgtagaagtacctacagaa
tatacccaggaaatcattgaaagacttggcgtaacggaaatcaacggcatgaccgtgaaa
ttccagaaggctgagaaaaaatcaatggaccccgcagaaggtggccgtgaattgcaagag
ctggaagatcgtcctagaaaattctatgacaagcctttcggcggcggcggtgaccgtggc
ggcagcagaggtggctttggtggagaccgcggtggttacggcggaggaaacagaggcggt
ggcgatcgtggtggcagcagaggcggctacggcggtggagaccgtgaccgcggcggcgac
agaggcggttctcgcggaggtgacagaggtggaagccgctttggtggtggagaccgtgac
cgcggcggaaacggcggcggaggcttccgggaaagaaaaagaagagatttctaa
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