Nibribacter ruber: GU926_10415
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Entry
GU926_10415 CDS
T06388
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
nib
Nibribacter ruber
Brite
KEGG Orthology (KO) [BR:
nib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nib03016
]
GU926_10415
Enzymes [BR:
nib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GU926_10415
Transfer RNA biogenesis [BR:
nib03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GU926_10415
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QHL87819
UniProt:
A0A6P1NZT6
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All DBs
Position
2482401..2483549
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AA seq
382 aa
AA seq
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MNQPAFVLEGRPVYVVDTAEALSEAAAHLGQRPELALDLEFDQHHYTYGFTLCLIQISDG
HACFLIDPFSLEDLQPLWDVLENPAIVKIFHHANNDLMLLSMLGCQVRNLVDTAVAAKIL
NYAKAALGTLLEEELGLNLDKSQQMSNWTLRPLTKKQLEYAALDVLHLHPLKEKMLGKVA
DLGRLHWLAEEDKLLESITFSTPTDPHLKIKFPQRLTYLQQFILKPIYDFRDELAQKWNI
PAGQVINTAALMALLNDPSQDLNQWLHHTRGVHGRLQQDRYEAQLQRLLNGSLQEAKKRQ
IPNRLPSNPYPPRFKTPETEARKDQLCLVQKALIDAYGAYATPLLLDQSTITHYSQTGDL
IIQKNYAREIVLQTAADMGIVL
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaacctgcatttgtcttagagggcagacccgtttacgtggtggatacggcagag
gcgctgtctgaggcagctgcccatcttggccaaagaccagaactggccctggacctagaa
tttgaccaacaccattatacgtacggcttcacgctctgccttattcagatctctgacggg
cacgcctgctttctgatagatcctttctccttagaagacctgcaaccgctctgggacgtg
ctggagaacccggctattgtcaaaatcttccaccacgccaacaatgacctcatgctcctg
agcatgctgggctgccaggtgcgcaacctggttgacaccgccgtggccgccaagattctc
aactacgccaaggcggcgttgggcaccctgctggaagaagaactgggtcttaacctggac
aagtcacagcagatgagcaactggacgcttcggccccttaccaagaaacaactggagtac
gccgccctggacgtgctgcacctgcacccgctcaaggaaaagatgctgggcaaggtagcg
gacctgggacgattgcactggctggcagaggaagacaaactgctggaatccattactttc
tccacgcccacagacccgcatttgaagataaagtttccgcagcggctcacgtacctgcag
cagttcatcttaaaaccgatttatgatttcagggatgagctagcgcagaaatggaacatt
ccggccgggcaggtcatcaatactgctgcactcatggcgctgctcaatgaccctagccag
gatctaaaccagtggctgcaccacacgcgcggcgttcacggccgattgcagcaagaccgc
tatgaggcccagctgcagcgcctgctcaacggctcactgcaggaggccaagaaacggcag
attcctaaccggttaccatctaacccgtacccgccccggttcaagaccccagagaccgaa
gcccgcaaagaccagctctgcctggtgcaaaaggccctcatagacgcctatggtgcctat
gccacgccgctactcctggaccaaagcaccatcacacactacagccagaccggtgacttg
atcattcagaagaactacgcgcgcgagattgttttgcagacggccgcagacatgggtatt
gtactgtaa
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