Nibribacter ruber: GU926_13205
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Entry
GU926_13205 CDS
T06388
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nib
Nibribacter ruber
Pathway
nib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GU926_13205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nib03019
]
GU926_13205
Enzymes [BR:
nib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GU926_13205
Messenger RNA biogenesis [BR:
nib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GU926_13205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CMS1
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
QHL88338
UniProt:
A0A6P1P172
LinkDB
All DBs
Position
complement(3131321..3132682)
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AA seq
453 aa
AA seq
DB search
MTFSDLNLIEPLLQALHEEGYTQPTPIQEQAIPPVLNGDDILGCAQTGTGKTAAFSLPLL
QRLHEAGPAHPAKAIRALILTPTRELALQIGESIAAYGRYTNIKHTVIFGGVGQTPQVEQ
IRRGVDILVATPGRLLDLMNQGLLSIKHLETFILDEADRMLDMGFIHDVRKVIAQIPAKR
QTLLFSATMPQEIQKLSSSILHEPVYVEVTPVSSTAEKIAQKVYFVDKMAKRALLRHLLQ
DGDITRALVFSRTKHGADRIAKDLAKAGISAQAIHGDKAQSTRVKALTQFKNNELRALVA
TDIAARGIDVDDLTHVINIDLPNEPETYVHRIGRTGRAGAEGLALSFCDDTELPYLRDIE
RLTKQTIEVETDQPFHADYKKLPLTGGKSTDKIAKASNGGGNRSFRQPQAGRPQSSRKPN
PSGSGGSGNASGGGNRDRRSGSGNGGGRRSGGR
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgacattctcagaccttaatttaattgaacctcttctgcaagcgttgcacgaagaaggc
tatacgcaacccactcccattcaggaacaggccattccgccggtcttgaacggagacgat
attctaggttgcgcccaaaccggaaccggtaagaccgccgccttcagcttgcctttgctg
cagcgtctgcacgaggcgggaccggcccacccggccaaagccatcagagccttgatcctg
acgcccacgcgtgagctggccctgcagattggcgaaagcattgccgcctacggccgctac
accaacatcaagcacaccgttatttttggcggcgtgggacaaacgccccaggtagaacag
ataagacgcggcgtagacattctagtggccacgcccggccgtttgctggatctcatgaac
cagggcctgctgtctatcaagcacctggaaacgtttatccttgacgaagctgaccgcatg
ttggacatgggcttcatccatgacgtgcgcaaggtgattgcccagattccggccaagcgc
cagacgctgttgttctctgccaccatgccccaggagattcagaaactctccagcagcatt
ttgcatgaaccggtgtatgtagaagtgacccccgtttccagcaccgctgagaagattgcc
cagaaagtatattttgtggacaagatggccaagcgcgccttgctcagacacttgttgcaa
gacggtgatattacccgcgccctggttttctcccgcaccaagcacggcgccgatagaatt
gccaaagacctggccaaagccggcatctcggcgcaagccattcacggtgacaaagcccag
agcacccgtgtaaaagccctgacccagttcaagaacaacgagttgcgcgccctggtagcc
acagacattgccgcccgcggtattgacgtagatgacttgacgcacgtgatcaacattgac
ctgcccaacgagcccgaaacctacgtgcaccgcattggccgtacgggtagagccggcgcc
gaggggttggccctatcgttttgcgatgacactgagctgccgtacctacgcgacattgag
cgcctcaccaagcagaccattgaggtagagacagaccagccgtttcacgcagactacaaa
aaactgcccttgaccggcggcaagtccactgataagattgccaaggccagcaacggcggt
ggcaacagaagcttcagacagccgcaggccggccggccgcaatcttcgcgcaagcccaat
ccttctggatcaggcggtagcgggaacgcctcaggcggtggcaacagagacagacgctct
ggttccggcaacggcggcggtcgcagatctggcggcagatag
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