Nibribacter ruber: GU926_16855
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Entry
GU926_16855 CDS
T06388
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nib
Nibribacter ruber
Pathway
nib03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nib00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GU926_16855 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nib03019
]
GU926_16855 (recQ)
03400 DNA repair and recombination proteins [BR:
nib03400
]
GU926_16855 (recQ)
Enzymes [BR:
nib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GU926_16855 (recQ)
Messenger RNA biogenesis [BR:
nib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GU926_16855 (recQ)
DNA repair and recombination proteins [BR:
nib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GU926_16855 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
QHL89008
UniProt:
A0A6P1P3V2
LinkDB
All DBs
Position
3996091..3998271
Genome browser
AA seq
726 aa
AA seq
DB search
MLVKQDNFLKNKLKEVFGYSQFRGNQEAIIENIMAGKNTFVIMPTGAGKSLCYQLPALAM
EGTAIVISPLIALMKNQVDQLNAFGVNAQFLNSTLTKAEINRVKRETINGDVKLLYVAPE
SLTKEETLDFLKQANITFVAIDEAHCISEWGHDFRPEYRKIRGIIDSIGNLPIIALTATA
TPKVQLDIQRNLQMDDASVFKSSFNRTNLYYEVRPKHQTKKQVIKYIKKNKGKSGIIYCL
SRKKVEEIAELLKVNDIKALPYHAGLDAPIRMANQDAFLNEEADVIVATIAFGMGIDKPD
VRFVIHYDTPKSIEGYYQETGRAGRDGLEGNCLMFYSYDDIVKLEKFSKDKPVTERDNSK
LLLQEMASYADSAVCRRRQLLHYFGEMYNKDCGFCDNCVHPKEKFEAEKELILAIKAVQQ
TKERFPMDHLVHVLMGMKDQYVESYSHDQLEVYGAGKEHDAAYWTSVLRQALLFDYLEKD
IENFGTVKISAKGAEYLKKPHPIKFAKDHNFEEEVQQEEEKVETQAAAGHDTVLFDMLKS
LRKKMAKELSLPPYVLFQDPSIKEMATTYPTNREDLAHIAGVGMGKVQKFGKPFLDLITK
YVEENDIVTAADVVVKTTVNKSKLKIYVIQQIDKKMDLEEIASTKSITMAELIEEIEHIC
YSGTKLNLDYYINGVLDQERQQEVMDYFMHATTDNMAEAMKELGTDDYTEDDLRLMRIKF
LSKYAN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgttagtgaaacaagacaattttttaaaaaacaaattaaaggaagtttttggctatagt
caattcaggggcaaccaagaagctataattgagaacatcatggcaggcaagaacacgttt
gtgatcatgcccaccggcgccggcaagtcgctttgctaccagctgcccgcgctggctatg
gaagggacggccatcgtcatttcgcctttaattgccctgatgaagaatcaggtggaccaa
ttgaatgcctttggggtgaacgcacagttcttgaattctaccctgaccaaggcagagatt
aaccgcgtaaagagggagaccatcaatggagatgtgaagttgctgtacgtggcaccagaa
tcactaaccaaagaagagaccctggactttttaaagcaggccaacatcaccttcgtggcc
attgacgaggcgcactgtatttctgagtggggccatgacttcaggccagagtaccgcaaa
atcagaggcatcattgacagcattggcaacctgcccatcattgcccttaccgccacggcc
acgcccaaggtgcagctggacatccagcgcaacctgcaaatggacgacgcttctgtgttc
aagtcttctttcaatagaaccaacctgtactacgaggtgcgccctaagcaccagaccaaa
aagcaggtcatcaaatacatcaagaaaaacaaaggcaagagtggcatcatctactgcctc
agccgcaagaaggtagaagagattgccgagctgctgaaggtaaatgacatcaaagccctt
ccgtaccacgccggtctggacgcccccatcaggatggcgaaccaggatgcgtttctgaac
gaagaagccgatgtgattgtggccaccattgcctttggcatgggcattgacaaaccagac
gtacgctttgtaatccattatgacacgcctaagtccattgagggctactaccaggagacg
ggccgggccggacgtgacggactggagggtaactgcctcatgttctacagctatgatgac
attgtcaagctggagaagttcagcaaggacaagccggtgacggagcgcgacaactccaag
ttgttgctgcaggaaatggcctcgtatgcagactcagcggtgtgtagaagaagacagctg
ttgcattacttcggggagatgtacaacaaggattgtggcttctgtgacaactgcgtgcac
cctaaagagaagtttgaagccgagaaagagttaatcctagccattaaagccgtgcagcag
accaaggagcgcttcccgatggaccacttggtacacgtgctcatgggcatgaaagaccag
tacgtggagagctacagccatgaccagctggaggtctacggagccggcaaggagcatgac
gccgcctactggacctcggtgctgcgccaggccttgttgtttgactacctggagaaagac
attgagaacttcgggacggtgaaaatctctgccaaaggggcagagtacctcaagaagccg
catcccatcaaattcgcgaaagaccataactttgaggaagaggtacagcaggaagaagag
aaggtagaaacccaggccgcggccgggcatgataccgtgctgtttgatatgctcaagtcc
ctgcgcaagaaaatggcgaaggagctaagcttgccgccgtacgtgctcttccaggatccg
tccatcaaggaaatggccacaacctatcccaccaacagagaagacctggcgcacattgcc
ggggtgggcatgggcaaggtgcagaagtttggcaagccgttcctggacctcattaccaaa
tacgtagaggagaacgacattgtcaccgccgccgatgtggtggtgaagaccaccgtcaac
aagtccaagctcaagatttacgtgattcagcagattgacaagaaaatggacctggaggag
attgcctctaccaaatccatcaccatggccgagctgattgaggagattgaacacatctgc
tactcgggcaccaagctcaacctggactactacatcaacggagttctggaccaggagcgt
cagcaggaggtaatggactacttcatgcacgccaccacagacaacatggccgaagccatg
aaagaactgggcaccgatgattacaccgaggacgacctgcgtttgatgcgcatcaagttc
ttgtctaaatatgccaactaa
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