Nitrosarchaeum sp. AC2: DSQ20_07375
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Entry
DSQ20_07375 CDS
T06694
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nic
Nitrosarchaeum sp. AC2
Pathway
nic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSQ20_07375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nic03019
]
DSQ20_07375
03009 Ribosome biogenesis [BR:
nic03009
]
DSQ20_07375
Enzymes [BR:
nic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSQ20_07375
Messenger RNA biogenesis [BR:
nic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSQ20_07375
Ribosome biogenesis [BR:
nic03009
]
Prokaryotic type
rRNA helicases
DSQ20_07375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Helicase_C_2
AAA_30
CMS1
Flavi_DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QLH11302
LinkDB
All DBs
Position
1239499..1240860
Genome browser
AA seq
453 aa
AA seq
DB search
MTKFQDLGLREELLKGIREMGFDEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFALAM
LQEIQPKKGIQGLVMAPTRELAMQISSEIKKFGKYTGIRVATVYGGQGMGLQLDALDRGV
EIVVATPGRLIDHLKRGSIELGDITHIVLDEADTMLDMGFVDDIQFILDLAPEERVMSLF
SATMPTEILRLSEDYLKNPKQFLLDADDLSGEGIDQAYLVIKDRDKMKYLIDFIKPLKGQ
IIVFCSTKYRTRDVAKYLHQEKFDAVAIEGDMSQSRREQSMSKFRSGKVDILVATDVASR
GIDVPRVELVVNYDVPNQEMAYFHRIGRTARAGAKGRAITLVSYSSVGDWNLIKRQIKVP
LTDLNKEMGIEISIPDPLKRQSPSRRFGGSQSRSGYSRGRSGGGYGRSGGSGGYRGSNRG
DARDDRSGGRKDTVTAIVETAMADAVDGSSCKT
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttcaagatttaggattaagagaagaattactgaaagggattcgtgaaatg
ggatttgatgaagcatttcctattcaagaagccgttattccagtattacttacaggaaga
gatgtcgtaggacaagctcatactggttctggtaaaacagcggcatttgctttagcaatg
cttcaagagatacaaccaaaaaaaggcatccagggtttggtgatggctccaacaagagag
cttgcaatgcaaatttcatcagagataaagaaatttggaaaatatactggaattagagta
gcaacagtttacggaggccaaggaatgggattacaattagatgcattagatagaggggta
gagatagtagttgcaactcctggaagattaattgatcatcttaaacgtggctcaattgaa
ctaggagatatcactcacatcgttttagatgaagcagatacaatgttagatatgggattt
gttgacgatattcagtttattttagatcttgctccagaagagagagtaatgtcattgttt
tcagcaacaatgccaacggaaattttaagattatctgaggactatctaaagaatcctaaa
caatttttgcttgatgcagatgatcttagcggagaaggtatagaccaagcatacctggta
attaaagacagagataaaatgaaatatcttattgattttatcaaaccacttaaaggtcag
atcatagttttctgttctacaaaatatagaaccagagatgtagcaaaatatcttcatcaa
gaaaaatttgatgcagttgcaatcgaaggagacatgtcacaaagcaggagagagcaatca
atgtctaaattcagaagcggtaaagtagacattcttgttgcaaccgatgtagcatcaaga
ggaatcgatgttccaagagtagaactagtagtaaattatgatgttccaaatcaagagatg
gcatatttccacagaattggaagaaccgcaagagcaggagcaaaaggaagagcaatcaca
ctagtatcatactcatctgtaggagattggaatttaattaaacgccaaatcaaagtaccg
ctaacagatttgaataaagagatgggaatagaaatttcaattcctgacccattaaagaga
caatcaccatctagaagatttggaggatcacaatcaagatctgggtattcaagaggcaga
agtggtggcggatatggaaggtctggaggttctggcgggtatagaggttccaatagagga
gatgcaagagatgacagaagtggcggaagaaaagatacggtgaccgcaatagtggaaaca
gctatggcggacgcagtagatggtagtagctgtaaaacttaa
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