Nitrosarchaeum sp. AC2: DSQ20_08595
Help
Entry
DSQ20_08595 CDS
T06694
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nic
Nitrosarchaeum sp. AC2
Brite
KEGG Orthology (KO) [BR:
nic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nic03016
]
DSQ20_08595
Enzymes [BR:
nic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DSQ20_08595
Transfer RNA biogenesis [BR:
nic03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DSQ20_08595
Prokaryotic type
tRNA splicing ligases
DSQ20_08595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF3492
Complex1_LYR
Motif
Other DBs
NCBI-ProteinID:
QLH11489
LinkDB
All DBs
Position
complement(1443296..1444744)
Genome browser
AA seq
482 aa
AA seq
DB search
MSTITPKKIGENQYLIEADLNLGMKVPVKIYADEALLQKMLTDRTIMQAKNVATIPGIVG
HSVVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRSNLTENDVRLKLKE
LVTDLFSSIPSGVGSKGAVKLSHSQLDEVLVRGVDWAIDHGYGSTHDSDVCEENGQIKNA
DPNKVSDKARKRGAPQLGSLGSGNHFLEVQKVSEIHDEEAAKRMGIKEGTITILIHCGSR
GFGHQVCSDYLRISEQSMEKYDITLADRELACVPNTSEEGESYRKAMFAALNFAWSNRQM
ITHWTRKSFERVFNQSESDLEMNLVYDVAHNIAKVEKHKVDGKERKLVVHRKGATRAFPA
NREEVPLKYRDLGQPVLVPGSMGTASWILLGKPNSMDLSFGSTAHGAGRTMSRSKARRDF
TEDNVRKSLSDKGIFIKALTRDGVVEETPQAYKDVDAVVDVSHNLGIATKVAKLVPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtctactataactcctaaaaaaattggagaaaatcaatatctaattgaggctgactta
aatcttggaatgaaggttccagttaagatctatgctgatgaagcattactacagaaaatg
ttaactgatcgaactatcatgcaggcaaaaaacgttgcaactatccccgggatagtgggt
catagcgtagtcttaccagatggtcatgagggatacggatttcccgtaggaggtgtagca
gctatggatgctgaagaaggaatgattagcccaggcggtgtagggtatgatatcaattgt
ggtgtaagattacttcgttcaaatttaactgaaaacgacgttcgtttaaaattaaaagaa
ctcgtcacagatctttttagttcaattccatctggtgttggttctaaaggagcagtaaaa
cttagtcactctcaacttgatgaagtattggtacgtggtgtagattgggcaattgatcat
ggatatggttcaacacatgattctgatgtttgtgaagaaaatgggcaaataaaaaatgct
gatccaaataaagtttcagataaagcaagaaaaagaggtgcaccacaactaggaagcttg
ggttctggaaatcattttcttgaagtacaaaaagtatctgaaattcatgatgaagaagct
gcaaaaagaatgggaattaaagaaggaaccattacaattttaattcactgtggctctcgt
ggatttggtcatcaagtatgtagtgattatttgagaatctcagaacaatctatggaaaaa
tacgatattactttagcagacagagaacttgcatgtgttccaaatacatctgaagaaggt
gaatcataccgaaaagcaatgtttgctgcattaaattttgcatggagtaatagacaaatg
attactcattggacaagaaaatcttttgaacgagtctttaatcaatcagaatctgatctt
gagatgaatttggtttatgatgttgctcataatattgctaaagttgaaaaacataaagtt
gatggcaaagaaagaaaacttgtagttcatagaaaaggtgctacacgtgcatttcctgca
aatcgagaagaagttccattaaaatacagagatcttggtcaacctgttttagttccaggt
tcaatgggaactgctagctggatattgcttggaaaaccaaattcaatggatttgagtttt
ggttctacagctcacggtgctggaagaactatgtctagatcaaaggcaagaagagatttc
acagaagataatgtcagaaaatctctaagcgataaaggcatatttatcaaggcattaacg
cgtgatggagttgtggaagagacacctcaagcatacaaagatgttgatgctgtagtagat
gtatctcataatctaggaatagccactaaagtagcaaaattggtgcctataggtgtgatt
aaaggttga
DBGET
integrated database retrieval system
