KEGG   Nitrosarchaeum sp. AC2: DSQ20_09120
Entry
DSQ20_09120       CDS       T06694                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
nic  Nitrosarchaeum sp. AC2
Pathway
nic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DSQ20_09120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nic03019]
    DSQ20_09120
Messenger RNA biogenesis [BR:nic03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     DSQ20_09120
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     DSQ20_09120
SSDB
Motif
Pfam: ECR1_N Ribosomal_L37e DUF6929 DUF6910 RRP4_S1 DUF7464 Prok-RING_1
Other DBs
NCBI-ProteinID: QLH11578
UniProt: A0A7D5MEJ8
LinkDB
Position
1541487..1542038
AA seq 183 aa
MSEIAALPGDKIASIEEYETGYNTFDDGDMVRASTVGKTELDKEARVANIKHPKMISIPK
VGDIIIGTVAAVMSSMIAVSIDYINGKPTTSKVECICSTRNLRKKNVALVNDIVTLKILN
HLNGTIHATIEEPHLGVLFTKCRKCGKKVVQMRDAIKCTECSWIDERKLSTNYGNSDFVK
LRE
NT seq 552 nt   +upstreamnt  +downstreamnt
atgtctgaaattgctgcacttccaggagacaaaatagcatctattgaagaatatgaaaca
ggctacaatacttttgatgacggagatatggtccgtgcatcaactgtaggtaagacagaa
ctggacaaagaagctagagttgcaaacataaaacatccaaagatgatatcaattcctaaa
gtaggagacatcattattggaactgtagcagcagtaatgtcttctatgatagcagtatca
attgattacattaatggtaaaccaaccacttctaaagttgaatgtatttgctcaacaaga
aatcttagaaaaaagaatgttgctttggtaaacgatattgttacactaaaaattttgaat
catctaaatggtacaattcatgcaacaattgaggaaccacatttgggcgtattatttaca
aaatgtagaaaatgtggtaaaaaagtagtccagatgcgcgatgccataaagtgtacagaa
tgttcttggattgatgaaagaaaactttcaacaaattacggtaatagtgatttcgtaaag
ctgagagagtaa

DBGET integrated database retrieval system