Nitrosopumilus piranensis: NPIRD3C_0489
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Entry
NPIRD3C_0489 CDS
T03656
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
nid
Nitrosopumilus piranensis
Pathway
nid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NPIRD3C_0489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nid03019
]
NPIRD3C_0489
Messenger RNA biogenesis [BR:
nid03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NPIRD3C_0489
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NPIRD3C_0489
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GFIT
Motif
Pfam:
ECR1_N
RRP4_S1
Ribosomal_L37e
Zn_ribbon_3
EXOSC1
DUF7464
Motif
Other DBs
NCBI-ProteinID:
AJM91703
UniProt:
A0A0C5BPR9
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All DBs
Position
complement(418142..418693)
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AA seq
183 aa
AA seq
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MSENATFPGEKIAAIEEYEAGYNAFDDGDMVRAATIGKKDIDKTTRTANIKHPKDLSIPK
VGDIVIGTVAAVMSSMIAVSIDYINGNPTTSKVECVCSTRNIRKRNIALVNDIAKLKILN
HLNGTIHATINEPNLGILFTKCRKCGEKVVPMRDAIKCTECSWIDERKLSTDFGKSDFVK
LRE
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaatgctacatttccaggtgaaaaaatagcagctattgaagaatatgaagct
ggatacaatgcttttgatgatggagacatggtcagagcagcaactattggcaaaaaagac
attgataaaactactagaactgccaacatcaagcatccaaaagatctatccataccaaaa
gtaggagatattgtgattggaactgttgcagcagtaatgtcatctatgattgcagtctca
attgattacataaatggtaaccctaccacatcaaaagtggaatgtgtgtgttcaacaagg
aatatcagaaaaagaaatattgcacttgtaaatgatatagcgaaattaaaaattttaaat
catctcaatggtactattcatgcaacaattaatgagccaaatttaggaatactctttaca
aaatgccgaaagtgtggtgaaaaagtggttccaatgcgagatgctataaaatgtacagaa
tgttcatggatcgatgagagaaaactatctacagactttggcaaaagtgattttgttaaa
ctgagagaataa
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