Nitrosopumilus piranensis: NPIRD3C_0927
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Entry
NPIRD3C_0927 CDS
T03656
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nid
Nitrosopumilus piranensis
Pathway
nid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NPIRD3C_0927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nid03019
]
NPIRD3C_0927
03009 Ribosome biogenesis [BR:
nid03009
]
NPIRD3C_0927
Enzymes [BR:
nid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NPIRD3C_0927
Messenger RNA biogenesis [BR:
nid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NPIRD3C_0927
Ribosome biogenesis [BR:
nid03009
]
Prokaryotic type
rRNA helicases
NPIRD3C_0927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
Motif
Other DBs
NCBI-ProteinID:
AJM92139
UniProt:
A0A0C5BV95
LinkDB
All DBs
Position
complement(784630..785949)
Genome browser
AA seq
439 aa
AA seq
DB search
MTKFQELGLKEEILKGITDLGFDDAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFALSM
LQEIQPRNGIQGLIMAPTRELAMQITDEIKKFGKYTGIRVATVYGGQGMGLQLDALERGV
EIVVATPGRLIDHLKRGSIELRDVTHIVLDEADTMLDMGFVDDISFILDLAPEDRVMSLF
SATMPTEILRLSEEYLKNPKQFLLDADDLSGEGIDQSYLVIKDRDKFKYLIDFIKPIKGQ
SIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMGKFRSGKADILVATDVASR
GIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAITFVSYSSVGDWNLIKRQIKVP
IKDLNEEMGIEIAIPDPLKRQMPSRRYGGQSRSNYSRGGRSGGYGSSGGRRDSRDDRGGR
RRFNDRGGSRNSYGGRSKW
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttcaagaattaggattaaaagaagagatactaaaagggatcaccgatctt
ggttttgatgatgcatttccaattcaagaagcagtaatcccagtattacttacaggaaga
gatgttgtaggacaagcacacacaggttctggaaaaactgcagcatttgcattatcaatg
ctacaagagattcaaccaagaaatggcattcaaggtttgatcatggcaccaacaagagaa
cttgccatgcagattacagatgagataaagaaatttggaaaatatacaggaatcagagtg
gcaacagtttatggaggacaaggaatggggcttcaattagatgctcttgaaaggggagta
gaaattgttgttgcaacaccaggtagactgattgatcatctcaaaagaggttcgatagaa
cttagagatgtcacccatattgttcttgatgaagcagatacaatgttagacatgggattt
gttgacgatatttcatttattttagatttagcaccagaagacagagtcatgtcattgttt
tcagcaacaatgccaactgagattctcagattatctgaagaatacttgaaaaacccaaaa
caattcttgctggatgcagatgaccttagtggagaaggtattgaccaatcttatctagtc
attaaagacagagataaattcaagtatctaattgattttatcaaaccaataaagggtcaa
tctattgtgttttgttcaacaaaatatagaaccagagatgttgctaaattcttacatcaa
gaaaaatttgatgcagttgcaatagaaggagacatgtcacaacatagaagagagcaatct
atgggaaagtttcgtagcggtaaggcagatattcttgtagcaactgatgttgcatcaaga
ggaattgacgttccaagagtagaactagtaatcaattatgatgttccaaaccaagaaatg
gcatatttccacagaatcggaaggactgcaagagcaggtgcaaaaggtaaagcaattaca
tttgtttcgtattcttcagtaggagattggaatttaattaagcgtcaaatcaaagttccc
atcaaagatttgaatgaagagatgggaattgaaattgcgattccagatccattaaaaaga
caaatgccatcaagaagatatggaggtcaatcaagatcaaactattcaagaggaggtcgc
tccggaggatacggcagttcaggtggcagacgagattctagagatgacagaggtggaaga
agaagattcaatgatagaggaggcagtcgaaatagttacggcggccgcagtaaatggtaa
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