KEGG   Nitrosopumilus piranensis: NPIRD3C_1246
Entry
NPIRD3C_1246      CDS       T03656                                 
Name
(GenBank) RNA polymerase Rpb6
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
nid  Nitrosopumilus piranensis
Pathway
nid03020  RNA polymerase
nid03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:nid00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NPIRD3C_1246
  09124 Replication and repair
   03420 Nucleotide excision repair
    NPIRD3C_1246
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nid03021]
    NPIRD3C_1246
   03400 DNA repair and recombination proteins [BR:nid03400]
    NPIRD3C_1246
Transcription machinery [BR:nid03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     NPIRD3C_1246
  RNA polymerase III system
   RNA polymerase III
     NPIRD3C_1246
  RNA polymerase I system
   RNA polymerase I
     NPIRD3C_1246
DNA repair and recombination proteins [BR:nid03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      NPIRD3C_1246
SSDB
Motif
Pfam: RNA_pol_Rpb6 T1R_D3-like Cauli_AT
Other DBs
NCBI-ProteinID: AJM92458
UniProt: A0A0C5BRT9
LinkDB
Position
complement(1028776..1029324)
AA seq 182 aa
MIRLYNVLRKNRYLSDANKTKVVEVAEDEIPATDEIAETEVETNAGLNKALDTYRKLIEK
KVDAEPLTEKEQDDLEKRIKEIETREVVENIEEHEPAEIPCEKGKITIGPPTLTRFEKAR
IMGARALQLSLGAPPFIPIPKTARISLDISMEELEQRVIPITIRRVLPNGDYQNIPIDYF
EK
NT seq 549 nt   +upstreamnt  +downstreamnt
atgattagattatataacgttttaagaaaaaatcggtacttgtctgatgccaataaaact
aaagtcgtagaagtcgccgaagatgaaattcctgcaaccgatgaaatcgcagaaactgaa
gttgaaaccaatgcaggactaaacaaagcacttgatacttatcgaaaattaattgagaaa
aaagttgatgcagaaccattaactgaaaaagaacaagatgacctagaaaaaagaatcaaa
gaaattgaaactagagaagttgttgaaaatattgaagaacatgaaccagctgaaattcct
tgtgaaaaaggaaaaatcactataggaccaccaacattaactagatttgagaaggcaaga
atcatgggcgctagagcattgcagttgtctttaggagcaccaccatttatcccaattcca
aaaactgcaagaatctcattggatatttcaatggaagaattagaacaaagagtaatacca
attacaattagaagagttcttccaaatggggattaccaaaatattccaatcgactatttt
gagaaatga

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