Nitrosopumilus piranensis: NPIRD3C_1561
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Entry
NPIRD3C_1561 CDS
T03656
Symbol
tfb
Name
(GenBank) Transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
nid
Nitrosopumilus piranensis
Pathway
nid03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
nid00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NPIRD3C_1561 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nid03021
]
NPIRD3C_1561 (tfb)
Transcription machinery [BR:
nid03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
NPIRD3C_1561 (tfb)
Prokaryotic type
Archaeal type
TFB
NPIRD3C_1561 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
HTH_11
Zn_ribbon_tTFIIB
CggR_N
Ribosomal_L37e
Ribosomal_S27
DZR
HTH_DeoR
Zn_Ribbon_1
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AJM92773
UniProt:
A0A0C5BSK8
LinkDB
All DBs
Position
complement(1235801..1236721)
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AA seq
306 aa
AA seq
DB search
MVVSTTNSNCLRCGKNSLLTDDVTGEQFCSKCGYVVSEKSNESGPEWRSFSTEGNVNPAR
AGAPSSLLMHDMGLSTVINPQNKDATGKPLSTSMKSTIERLRTWDSRSQSHAPVDRNLRQ
ALNELSRLKDKIALSANVLEKAAYLYRKALDKKLVRGRSISAMIAASLYAACRDTETPRT
LNDISTAANVKRKDIARCYRLLHHELELKMPVVNSIQCISRIASKLELSEKTKRHAVKIL
QDVQDNKESAGKDPMGLAATALYISCLKNKEAMTQRNLAEAANVTEVTIRNRFKGLKNQQ
NVDLGI
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggtagtttcaaccacaaattctaactgcttgcgctgtggaaaaaattctttgctaact
gatgatgttactggagaacagttctgttcaaaatgtgggtatgttgtttctgaaaaatca
aatgaatctggtcctgaatggagatctttttcaaccgaaggaaatgtaaatcctgcaaga
gccggtgccccttcttctcttttgatgcatgatatggggttatctaccgtaattaatcct
caaaataaggatgcaacaggtaaaccgctttctacatcaatgaaaagcaccattgagcgg
ttaagaacctgggatagtagaagtcaatctcatgcccctgttgatagaaatcttcgacaa
gctcttaacgaattatctagattaaaagacaagattgcactttctgcaaatgttcttgaa
aaggctgcttatctgtatcgaaaggctttggataagaaactagttagaggcagatctatc
tctgcaatgattgcagcatccctttatgctgcatgtcgcgatacagaaactcccagaact
ctaaatgatatatctactgctgcaaatgtaaaacgaaaagatattgcacgatgctacaga
ttgctccatcatgaattggaactaaagatgcctgttgtaaactcaatccaatgtatttca
agaattgcaagtaaactggaactctcagaaaaaaccaaaagacatgcagtaaaaattctt
caagatgttcaggataacaaagaatctgctggaaaagaccctatggggcttgcagccact
gcattgtacatctcttgccttaaaaataaggaagccatgactcaacgaaaccttgcagaa
gctgccaacgttacagaagttaccataagaaatcgattcaaaggactaaaaaaccaacaa
aatgtggatttgggtatttga
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