Nitrosopumilus piranensis: NPIRD3C_1580
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Entry
NPIRD3C_1580 CDS
T03656
Name
(GenBank) Collagen triple helix repeat
Organism
nid
Nitrosopumilus piranensis
Brite
Glycosaminoglycan binding proteins [BR:
nid00536
]
Heparan sulfate/Haparin
Extracellular matrix molecules (General comment) Storage depot, cell adhesion and motility, ECM/barrier formation
NPIRD3C_1580
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-ProteinID:
AJM92792
UniProt:
A0A0C5CC68
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Position
complement(1249205..1250818)
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AA seq
537 aa
AA seq
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MSSQSKLEIQGQAPFKQSGVYETQISITGSRPTDEQIKSKQFTSLWRGNFHLRVKDGVFS
ETIGTPENPIPSSVLELDTIWIVVTDLFSSLYSVFDVPLSKSKSTTSTQTSTETKTISEI
PKQKRSTKTSSSVTGPPGDKGATGPQGPPGDKGPPGPPGQIGPPGDKGPEGPQGPPGDKG
PTGDKGPPGDKGISGDKGLTGEKGITGDKGDKGDKGVPGPPGDKGDKGPTGPIGDKGPTG
LKGPTGDKGEKGPTGPPGDKGLSGLRGSPGEKGDKGPQGPPGEKGLTGPIGTPGEKGPTG
QTGVQGEKGIQGPPGPIGEKGPIGPAGEKGPFGPPGPLGDKGLTGPTGPPGDKGPVGPPG
PIGEKGVRGTEGPIGEKGPQGPQGPAGAKGLTGVPGPQGEKGEKGSQGPTGEKGLTGPTG
PPGDKGPVGPQGSQGERGPTGPSGEKGPQGPQGIQGPQGERGPTGPIGSIGEQGPRGEQG
PVGPPGPRGPPGPPGEKGPAGGMSSEQKALFKELLEILTEKNVISTEDQIKLMSYLY
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
gtgtcatctcagtctaaattagaaatccaaggccaggcaccattcaagcaatcaggtgta
tatgagactcaaatctcaattactggaagtagacctactgatgaacaaataaagtcaaaa
cagtttacttctctttggcgtggtaattttcatcttagagtaaaagatggagtattctct
gaaacaattggcacccctgaaaacccaattccttcttctgtattagaattagatacaata
tggatagttgtaactgatctattttcatcattgtattctgtttttgatgttcctttatca
aaatcaaaatcaaccacatctactcaaacatctactgaaactaaaacaatttctgaaatt
cctaaacaaaaacgttctactaaaacaagttctagtgtaaccggtccacccggtgacaaa
ggtgccactggtcctcaaggtccaccaggtgacaaaggtcccccaggtccacctggacaa
ataggtccaccaggtgacaaaggacctgaaggtcctcaaggtccaccaggtgacaaagga
cctactggtgacaaaggtcccccaggtgacaaaggaatttcaggtgataaaggactaact
ggagaaaaaggaattactggtgataaaggtgataaaggtgacaaaggtgtacctggtcca
cccggtgacaaaggtgacaaaggcccaacaggaccaattggtgataaaggtcctactgga
ttaaaaggacctactggtgataaaggagaaaaaggtccaacaggtccacctggcgataaa
ggtttatctggattaagaggttctccaggagaaaaaggtgacaaaggtccccaaggtcct
cccggagaaaaaggattaactggaccaattggaacacccggagaaaaaggtccaacaggg
caaacaggtgttcaaggtgaaaaaggaattcaaggaccgccaggaccaattggagaaaaa
ggtccaataggtcccgcaggagaaaaaggtccgtttggtcctccaggtccgcttggtgat
aaaggattaactggtcctacgggtccacccggtgacaaaggcccggtaggtcctccagga
ccaattggagaaaaaggtgttagaggaactgaaggaccaattggagaaaaaggtccacaa
ggtccacaaggtccagctggcgcaaaaggtcttacaggagttcctggtcctcagggagaa
aaaggagaaaaaggttcacagggacccacaggagaaaaaggattaactggtcctacgggt
ccacccggtgacaaaggcccggtaggtccacaaggttctcaaggtgaacgtggtccaaca
ggtccatcgggagaaaaaggtccacaaggcccacaaggaattcaaggtcctcaaggtgaa
cgtggcccaacaggtccgattggttctattggagaacaaggtccacgtggagaacaaggc
ccggtaggtcccccaggtccaagaggtcctcccggtccaccaggagaaaaaggtcctgca
ggtggaatgtcttctgaacaaaaagcattattcaaagaattattggaaatattaactgag
aaaaatgtaatttccactgaagaccaaatcaaactaatgagttatctttactaa
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