Nitrosopumilus piranensis: NPIRD3C_2113
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Entry
NPIRD3C_2113 CDS
T03656
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nid
Nitrosopumilus piranensis
Brite
KEGG Orthology (KO) [BR:
nid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nid03016
]
NPIRD3C_2113 (rtcB)
Enzymes [BR:
nid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NPIRD3C_2113 (rtcB)
Transfer RNA biogenesis [BR:
nid03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NPIRD3C_2113 (rtcB)
Prokaryotic type
tRNA splicing ligases
NPIRD3C_2113 (rtcB)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Complex1_LYR
DUF3492
Motif
Other DBs
NCBI-ProteinID:
AJM93323
UniProt:
A0A0C5BU80
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All DBs
Position
complement(1657707..1659155)
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AA seq
482 aa
AA seq
DB search
MTIVTPKKIGENQYQIDADSNLGMKVPVRIYANEGLLEKMLTDRTIMQARNVSSIPGIVG
HSVVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRSNLTEDLVRSKLKD
IVTDLFSSIPSGVGSKGAVKLSHSELDEVLVNGVNWAIDHGYGSTNDSDVCEENGQIKNA
DPNKVSDKARKRGAPQLGSLGSGNHFLEIQKVAEIHNQEAAEKMGIKEGTITVLVHCGSR
GFGHQVCSDYLRVAEQAMSKYDISLPDRELACVPNTSEEGESYRKAMFAALNFAWSNRQM
ITHWTRKSFERVFNQSESDLDMKLVYDVAHNIAKVEKHKVNGKERKLVVHRKGATRAFPA
NRDEIPSKYRHLGQPVLVPGSMGTASWILLGQPNSMDLSFGSTAHGAGRTMSRSKARRNY
TENDVKKSLNDKGIFIKALTRDGVVEETPQAYKDVDAVVDVSHNLGIATKVAKLVPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgactatagttactccaaaaaaaattggagaaaatcaataccaaattgatgctgattct
aatttgggcatgaaagttcctgtaagaatttacgcaaatgaaggattacttgagaagatg
cttactgatagaaccattatgcaagcacgtaatgtttcctcaattccgggaattgtgggg
catagtgttgttttgcctgatggacatgaagggtatggatttccagtaggtggcgttgct
gctatggatgctgaagaaggaatgatcagtccaggtggtgtaggttacgatattaattgc
ggagtcagactattgcgctcaaatttaactgaagatttggttcgctctaaactaaaagac
attgtcactgatctttttagttccattccatctggtgtgggttctaaaggtgctgtaaaa
ctgagtcattcagaacttgatgaggttctagtcaatggtgtaaactgggcaattgatcat
ggctatggttcaacaaatgattcagatgtatgtgaagaaaacggtcagattaaaaacgca
gatccaaacaaagtttcagataaagcaagaaagaggggtgcaccacaacttggtagttta
ggctcaggaaaccattttcttgagattcaaaaagttgcagaaattcacaaccaagaagca
gctgagaaaatgggaatcaaagaaggaacaattacagttctagttcattgtggttcaaga
ggatttggacatcaagtttgtagtgattatctaagagttgcagaacaagccatgagcaaa
tatgatatctcattgccagacagagaacttgcatgtgttcctaatacctctgaagaagga
gagtcttacagaaaagcaatgtttgcagcactaaactttgcttggagtaacagacagatg
attactcattggacccgaaaatcttttgaacgagtctttaatcaatcagaatcagatctt
gacatgaaactagtttatgatgttgcacacaatattgctaaagttgaaaaacacaaagta
aatggtaaggagagaaaactagttgttcacagaaaaggtgcaactagagcatttcctgca
aacagagatgagattccttcaaagtatcgtcacttgggccaacctgtcttggtacctggt
tctatgggtactgcaagctggattttacttggacaaccaaattccatggatctaagcttt
ggctctactgcacatggagcaggtagaacaatgtctcgttccaaggcaaggagaaactat
actgaaaatgacgtaaaaaaatccctaaatgataagggcatctttatcaaagcattgacc
agagatggagttgtggaagaaacacctcaagcctacaaagatgttgatgctgtagttgat
gtttctcacaatctaggaattgccactaaagtagcaaaattagtgcctataggtgtgata
aaaggttga
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