Nocardia iowensis: KV110_09565
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Entry
KV110_09565 CDS
T07470
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nie
Nocardia iowensis
Pathway
nie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KV110_09565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nie03019
]
KV110_09565
03009 Ribosome biogenesis [BR:
nie03009
]
KV110_09565
Enzymes [BR:
nie01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KV110_09565
Messenger RNA biogenesis [BR:
nie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KV110_09565
Ribosome biogenesis [BR:
nie03009
]
Prokaryotic type
rRNA processing factors
KV110_09565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QXN93310
LinkDB
All DBs
Position
2108556..2111609
Genome browser
AA seq
1017 aa
AA seq
DB search
MAEKEPLETTPQDAEQLPERIRVHALAKLLGVTSKRILAKLTELGSDARSAQSNVDRAIA
ESVRDALGPPEGDTPAAPAAEAPVEQQAEAQQQPEAPSRGHGGLVFSAPEPLIGNSESEN
PNEVAHQPSVQLFTHPVREEPHVAAPVVFESAAVVQAPLFLPPDAAAAEQTRRKRRTERD
VRREEPVVEQQPEEEPEAVEDDQESADQQGDADGQPRRRRRGRRGRGRGRGEQHSDADDE
NDSDDNEDEQHGETADSTESAESPDDNTDTEDDENEPEGASRRRRRRRRRKVAGEPAESE
VTEDDPPNTVVHEREPRNKSRARATVDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPILT
ESEFLARRESVDRVMVVREKAFPDHPTATQVAVLEDSILVEHFVTSTGSASMVGNVYLGK
VQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGKERKIEQALKPGDQVLVQVSKDP
VGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEILRDIVPNDAGVIIRT
ASEGVAEDELARDVERLQATWRTIEKAAEGKNDGQPKTLYEEPDLLVKVIRDLFNEDFSK
LVIEGDRAWSTVEKYIGTVAPEMLARVSRHDNSNGVDVFEAYRIDEQLAKALDRKVWLPS
GGTLVIDRTEAMTVVDVNTGKFTGSGGSNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVV
DFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCE
HCHGRGILVHAYPVEPSAGDDGGAGRGTRETGSRRRRGRDKGAAAAAPAAASNGTVPVEA
EEDIAVKRAHPVALAMAAHHGDADEDESTDDIEPLETEDVEVVTTEAAVAVPAEDVETEP
AEVVEVVETVTETTPAAEAPAREAPARAESAPEPAADRAVTNGAPEPAPRTGRRRRVARS
AAAPAADSSGAVFVLPTAEQAPAPAVDFTAEVPVEVPQRRPRRRAVGRPAGPPPAEA
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaaaaagagccattggaaacaacaccacaggatgccgaacaattgccggagcga
atccgagttcacgcactcgccaagctgctgggggtaacgagcaagcgcatcctggccaag
ctcaccgagttggggtccgacgcgcgcagcgcgcaatcgaatgtcgaccgggcgatcgcg
gaatccgtccgcgacgcactcggcccgccggaaggcgacacccccgcggccccggctgcc
gaggcaccggtcgagcaacaggccgaggcacagcagcagccggaagcgccgagtagaggt
cacggcgggctggtcttttccgcacccgaaccgctgatcggcaactccgagtcggagaac
ccgaacgaggtcgcccaccagccctcagtgcagctgttcacccatccggtccgggaagag
ccgcacgtcgcggcgccggtggtcttcgagtccgccgccgtcgtgcaggccccgctgttc
ctgccgccggatgccgcggccgccgaacagacccggcgcaagcgccgcaccgagcgcgac
gtccgccgtgaagagccggtggtcgagcaacagcccgaggaagagcccgaagcggtcgag
gacgaccaggaatcggccgaccagcagggcgatgccgacggtcagccgcggcgcaggcgc
cgtggccgccgtggtcgtggccgcgggcgtggcgaacaacacagcgacgccgatgacgag
aacgattcggacgacaacgaggacgagcagcacggcgagaccgccgactcgaccgagtcc
gccgagtcgcccgacgacaacaccgacaccgaggacgacgagaacgagcccgagggcgcg
agccgtcgccgtcgtcgtcgccgtcgccgcaaggtggcgggcgagccggccgagtccgag
gtcaccgaggacgacccgccgaacaccgtcgtacacgagcgcgaaccgcggaacaagagc
cgcgctcgcgccaccgtcgacgaggtgcagggcatctccggttctacccggctggaagcc
aagcggcagcgcaggcgggacggccgcgacgcgggccgccgcaggccgccgatcctgacc
gagtcggagttcctggcccgccgcgaatcggtggaccgggtgatggtggtgcgcgagaag
gcgttccccgaccacccgaccgccacccaggtcgccgtgctcgaggacagcatcctggtc
gagcacttcgtcaccagtaccggttccgcgtcgatggtcggcaatgtctacctcggcaag
gtgcagaacgtgctgcccagcatggaggcggcgttcgtcgacatcggccgcggccgcaac
ggcgtgctctacgccggtgaggtgaactgggaggccgccggtctcggcggcaaggaacgc
aagatcgagcaggcgctcaagcccggcgatcaggtgctggtccaggtctccaaggatccg
gtcgggcacaagggcgcccggctgaccacacagatcagcctcgcgggccgcttcctggtg
tacgtgccaggcggcacctccaccggcatcagccgcaagctgcccgacaccgagcgcaag
cggctcaaggaaatcctgcgcgacatcgtccccaacgacgccggtgtgatcatccgtacc
gcatccgagggcgtggcagaggacgaactggcccgcgacgtggagcgactgcaggcgacc
tggcgcaccatcgagaaggcggccgaagggaagaacgacggccagcccaagacgctgtac
gaagagcccgacctgctggtcaaggtcatccgcgacctgttcaacgaggacttctccaag
ctcgtcatcgaaggtgaccgggcctggagcacggtcgagaagtacatcggcaccgtcgcg
ccggaaatgctcgccagggtctcccggcacgacaacagcaacggcgtcgacgtgttcgag
gcctaccggatcgatgaacagctggccaaggcgctggatcgcaaggtgtggctgccctcg
ggtggcacgctggtgatcgaccgcaccgaggcgatgacggtggtcgacgtgaacaccggc
aagttcaccggttccggcggcagcaacctggaagagacggtcacccgcaacaatctggag
gcggccgaggagatcgtgcgccagatgcggctgcgcgatatcggcggcatgatcgtcgtc
gacttcatcgacatggtgctggagtcgaaccgagacctggtgctgcgcaggctcaccgag
gcactcggccgggaccgtactcggcaccaggtgtccgaggtgacctcgctcggcctggtg
cagatgacccgtaagaagctgggcaccggcctggtcgaggcgttctcgacgacctgtgag
cactgccatgggcgcggcatcctggtgcacgcctacccggtggagccgtccgcgggcgac
gacggtggggccgggcgtggaactcgggaaaccggttcgcgtcgccgccgtggtcgcgac
aagggcgcggcagccgccgcacccgcggccgcgagcaatggcaccgtgccggtcgaggcc
gaggaggatatcgccgtcaagcgggcccacccggtcgcgctggcgatggccgcgcatcac
ggcgacgccgacgaggacgaatcgaccgacgacatcgagccgctcgagaccgaggatgtc
gaggtcgtgacgaccgaagccgcggtcgccgtgcccgctgaggacgtggagaccgaaccg
gccgaggtcgtcgaggtcgtcgagacggtcaccgagaccaccccggccgccgaggcaccg
gcccgcgaggcaccggcccgcgcggaatcggcgccggagccggctgcggatcgcgcggta
accaacggtgcgccagaaccggccccgcgtaccggacggcgtcgcagggtcgctcgttcg
gccgccgcaccggccgcggacagcagtggtgcggtgttcgtgctgccgaccgcggagcag
gctcctgcccccgctgtcgacttcaccgccgaggttccggtggaggtgccgcagcgtcgg
ccacgccgccgtgccgtcggtcgtcccgctggtccgccgcccgcggaggcgtag
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