Nocardia iowensis: KV110_11965
Help
Entry
KV110_11965 CDS
T07470
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nie
Nocardia iowensis
Pathway
nie03030
DNA replication
nie03430
Mismatch repair
nie03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KV110_11965 (dnaE)
03430 Mismatch repair
KV110_11965 (dnaE)
03440 Homologous recombination
KV110_11965 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nie03032
]
KV110_11965 (dnaE)
03400 DNA repair and recombination proteins [BR:
nie03400
]
KV110_11965 (dnaE)
Enzymes [BR:
nie01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KV110_11965 (dnaE)
DNA replication proteins [BR:
nie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KV110_11965 (dnaE)
DNA repair and recombination proteins [BR:
nie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KV110_11965 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
DUF655
Motif
Other DBs
NCBI-ProteinID:
QXN93716
LinkDB
All DBs
Position
2604987..2608535
Genome browser
AA seq
1182 aa
AA seq
DB search
MAASSGSFVHLHNHTEYSMLDGAAKISPLFAEAKRLGMNAVGMTDHGNMYGASEFYNSAK
KADIKPIIGIEAYIAPASRFDTKRVLWGDPSQKGDDVSGSGAYTHMTMVAENATGLRNLF
KLSSLASLEGQLGKWARMDEEIIAQYAEGIIATTGCPSGEVQTRLRLGHDREALEAAAKW
QEIFGKENFFLEIMDHGLSIERRVREGLLEIGKKLGIPPIATNDCHYVTKDQSTNHEALL
CIQTGKTLSDPTRFKFDGDGYYLKSAEEMRAIWDAEVPGACDNTVAIGERVQSYDDVWAF
RDRMPVFPVPAGEDQNSFLRKEVERGLARRFPAGVPDEYYTRAYFELDVIKQKGFPAYFL
VVGDLVSHAKEVGIRVGPGRGSAAGSLVAYALGITNIDPIPHGLLFERFLNPERPSAPDI
DIDFDDRRRGEMVRYATEKWGSDRVAQVITFGTIKTKAAIKDSARVLFGQPGFAIADQIT
KALPPPIMAKDISVSGITDPDHERYKEAAEVRELIASNPDVAKIYETARGLEGLIRNAGV
HACAVIMSSEPLTDTIPVWKRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAME
NIKANRGIDLDLDNLPLDDPATYELLSRGDTLGVFQLDGGPMRDLLRRMQPTGFNDIVAV
LALYRPGPMGMNAHNDYADRKNGRQPITPIHPELEEPLKDILSETYGLIVYQEQIMFIAQ
KVAGYSMGKADALRKAMGKKKLEVLEAEYKGFHAGMTANGFSAAAVKALWDTILPFAGYA
FNKSHAAGYGLVSFWTAYLKANYPGEYMAGLLTSVGDDKDKAAVYLSDCRRLGITVLPPD
VNESEMNFASVGKDIRFGLGAVRNVGANVVSSIIAARKEKSKFTDFSDYLNKIDAVACTK
KVTESLIKAGGFDSLGHPRKGLLLIHSDAIDAVMSTKKAEAIGQFDLFGGVDADESVSSV
FNVKVPEDEWEAKHKLALEREMLGLYVSGHPLNGVEHVLAAQSDTQIPAILEGDIKDGTQ
VTVGGILASVNRRINKNGLAWASAQLEDLAGGIEVLFFPQAYSVYGMDVVEDAVVLVKAR
VSVRDDRISLIANDLAVPDLSSIGVAKPLAVTISTRMCTPDKIGELKRVLSRHPGTADVH
VRHVGAREKTTLLKLDDSLRVSPSSALMGDLKALLGPGCLAG
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgtccggatcgttcgttcacctgcacaaccacaccgaatactccatgctc
gacggtgcggctaagatttcgcccctgttcgccgaggcgaaacggctggggatgaacgcg
gtggggatgaccgaccacggcaatatgtacggcgcctccgagttctacaactcggcgaag
aaggcggacatcaagccgatcatcggcatcgaggcctacatcgcgcccgcctcccggttc
gacaccaagcgcgtgctgtggggtgacccgagccagaagggcgacgacgtctccggctcc
ggcgcctacacccacatgaccatggtcgccgagaacgcgaccgggctgcgcaacctgttc
aagctgtcgtcgctggcgtcactggagggtcagctcggcaagtgggcgcggatggacgag
gagatcatcgcccagtacgccgagggcatcatcgccaccaccggctgcccgtcgggtgag
gtacagacccggttgcgcctcggtcatgatcgcgaggcactggaggccgcggccaagtgg
caggagatcttcgggaaggaaaacttcttcctggagatcatggaccacgggctgtccatc
gaacgccgggtccgtgagggactgctggagatcggcaagaagctcggcatcccgccgatc
gcgacgaacgactgccactacgtcaccaaggaccagtcgaccaatcacgaagcgctgctg
tgtattcagaccggcaagacgctcagcgacccgacccgcttcaagttcgacggtgacggc
tactacctcaagtcggccgaggagatgcgcgcgatctgggacgccgaagtgcccggcgcc
tgcgacaacaccgtggccatcggtgaacgcgtgcagtcctacgacgatgtgtgggcgttc
cgcgaccggatgccggtgttcccggtgccagcgggcgaggaccagaattcgttcctgcgc
aaggaagtcgagcgcggtctcgcgcgccgcttcccggccggggtgcccgacgagtactac
acccgtgcctacttcgagctcgacgtcatcaagcagaagggcttccccgcctacttcctc
gtcgtcggcgacctggtgtcgcatgctaaagaggtcggcatccgggtcggtcccggccgt
ggttcggcggccggttcgctggtcgcctacgcgctcggcatcaccaatatcgacccgatt
ccgcacggtctgctgttcgagcggttcctgaatccggagcggccgtccgcgcccgatatc
gatatcgacttcgacgatcgccgccgcggtgaaatggtccgctacgccaccgagaagtgg
ggcagcgaccgggtcgcccaggtcatcaccttcggcaccatcaagaccaaggccgccatc
aaggactccgcgcgagtgctgttcggccagcccggtttcgcgatcgccgaccagatcacc
aaggcgctgccgccgccgatcatggccaaggacatctcggtgtccggcatcaccgatccg
gatcacgagcgctacaaggaagcggccgaggtccgcgagctcatcgcgagcaacccggac
gtcgcgaagatctacgagacggcgcgtggcctggagggcctgatccgtaatgcgggcgtg
cacgcctgcgcggtgatcatgtcctccgaaccgctgaccgacaccatcccggtctggaag
cgggcccaggacggcgccatcatcaccggctgggactacccgtcgtgtgaggccatcggc
ctgctgaagatggacttcctcgggctgcgcaacctcaccgtcatcggtgacgcgatggag
aacatcaaggccaaccgcggcatcgacctcgacctggacaatctgccactggacgacccg
gccacctacgaattgctgtcgcgcggtgacacgctcggcgtcttccagctcgacggtggc
cccatgcgcgacctgctgcgccgcatgcagccgaccggcttcaacgacatcgtcgcggtg
ctcgcgctgtaccgcccgggtccgatgggcatgaacgcgcacaacgactacgccgaccgc
aagaacggccgtcagccgatcacgccgattcatccggagctcgaggaaccgctgaaggac
atcctttcggagacctacggcctgatcgtttatcaagagcagatcatgttcatcgcgcag
aaggtcgccggctactcgatgggcaaggccgacgcgctgcgtaaggccatgggtaagaag
aagctcgaggtcctggaggccgaatacaagggcttccacgcgggcatgaccgccaacggc
ttctccgcggccgcggtgaaagccctgtgggacaccatccttccgttcgcaggctacgcg
ttcaacaaatcgcacgccgcgggctacggcctcgtctcgttctggaccgcctacctcaag
gccaactatccgggcgaatacatggccggactgctcacctccgtgggtgacgacaaggac
aaggccgcggtctacctgtcggactgccgacgcctcggcatcacggtgctgccgccggac
gtcaacgagtccgagatgaacttcgcctcggtcggcaaggacatccgcttcggcctcggc
gcggtgcgcaacgtcggcgccaacgtggtgtcctcgatcatcgccgcgcgcaaggagaag
tcgaagttcaccgacttctccgactatctgaacaagatcgacgcggtcgcctgcaccaag
aaggtcaccgaatccctcatcaaggcaggcggattcgactcgctcgggcatccgcgcaag
ggtctgctgctcatccactccgacgccatcgacgcggtgatgtccaccaagaaggccgag
gcgatcgggcagttcgacctgttcggcggggtggacgccgacgagtcggtgtcctcggtg
ttcaacgtgaaggtgcccgaggacgagtgggaggccaagcacaagctggcgctggagcgc
gagatgctcggcctgtacgtgtccgggcacccactcaacggtgtcgagcatgttcttgcg
gcgcagtcggatacgcagatcccggcgatcctcgagggtgacatcaaggacggcacccag
gtgaccgtcggcggcattctcgcctcggtgaaccggcggatcaacaagaacggcctggcc
tgggcatcggcacagctggaagatctggccggtggcatcgaggtgctgttcttcccgcag
gcctactcggtgtacggcatggacgttgtcgaggatgcggtggtgctggtgaaggcccgc
gtctcggtgcgggacgaccggatctcgttgatcgccaacgatctcgccgtgccggacctg
tcctccatcggcgtcgccaagccgctcgcggtcaccatctccacccgcatgtgcacgccc
gacaagatcggtgaactcaagcgggtgctctcccggcatcccggcacggccgacgtgcac
gtccggcacgtgggtgcccgggagaagacgacactgctgaaactcgatgacagtctgcgg
gtttcgccgtcttcggcattgatgggcgacctgaaggcactgttgggacccggctgcctg
gcaggctga
DBGET
integrated database retrieval system
