Nocardia iowensis: KV110_28860
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Entry
KV110_28860 CDS
T07470
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nie
Nocardia iowensis
Brite
KEGG Orthology (KO) [BR:
nie00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nie03019
]
KV110_28860 (hrpA)
Enzymes [BR:
nie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KV110_28860 (hrpA)
Messenger RNA biogenesis [BR:
nie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KV110_28860 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
AAA_19
HA2_N
nSTAND3
AAA_30
T2SSE
NACHT
SLFN-g3_helicase
TsaE
PhoH
ResIII
Motif
Other DBs
NCBI-ProteinID:
QXN89494
LinkDB
All DBs
Position
6267502..6271716
Genome browser
AA seq
1404 aa
AA seq
DB search
MTRTADTGPRELRTRLANLSLRDEYRLKRRLDKARGGDLGAVEAEIAAAELRIDARRAAV
PEIRYPEQLPVTQRREDIAAAIAAHQVVIVAGETGSGKTTQIPKICLELGRGIRGTIGHT
QPRRLAARTVAERIAEELGTELGDVVGYTVRFTDHASDRTLIKLMTDGILLAEIQRDRLL
RRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDPELFARHFADEKGAP
APIVEVSGRSYPVELRYRPLSLELPRADDEDDEDTRVVDRDPVDAIGDAVTELFAEGDGD
VLVFLSGEREIRDTADALRDLKLPRTEILPLYARLSTAEQHRVFAPHPGRRVVLATNVAE
TSLTVPGIRYVVDPGTARISRYSMRTKVQRLPIEPVSQASARQRAGRCGRVADGICIRLY
AEDDFDSRPAFTEPEILRTNLAAVILQMTALGLGDIENFPFVEAPDKRAIRDGIALLEEL
GALGRRTGKDADTHADTGLTLTPIGRDMAQLPVDPRMARMLVEAHRGGCLAEVLIIVAAL
SIQDVRERPADNQQAADTKHARFTVEGSDFLAYLRLWDYLTEQRKSLSANQFRRMCREEF
LHYLRIREWQDLHGQLRTITKGLGWSTEDGAATQAAGTRREGAETAGADGQSDSESRGGR
SRGRTAASGRPDENSSRRAAAATSGPAGGRSGSRRRRSSGRAADSSPHAAAGSTVESDGD
PWDSVGIHQALLAGMLSHIGLREAESREFLGARNAKFMIFPGSSLAKKPPRWVMAAELVE
TSRLWGRITAKVEPEWAERLAGDLGKRTYSEPHWSAKRGAASAYERVTLYGIPLVTGRQV
DYGRIDPGLSRELFIRHALVQGEWQTRHEFFHRNRELIDDVADLEHRARRRDILVDDDVL
FEFYDKRLPADIVSVRHFDSWWKSARRKDPALLDFSTSTVVNENAAALDPAAFPDAWRQG
ELSFPLTYQFEPGNEEDGVTVRIPVEQLAHVRAVGFDWLVPGMRDELAAALIKTLPKTLR
RSVVPAPDFAAAALAALTPRAEPLRIGLARELSRLGSITIDPSDLDPGALPDHLRMTFAA
VDTEGRVLARSKSLAALKTQLAEQVSASVARATAGAERAPAAVWTSESLGTVEPTVRREV
AGQTVTGYPALVPEGDGVAVRVLSSPAAQAAAMRAGTRTLVLNALPTSVRTVTAGLPPTD
RLALSQNPYGSLEALVEDCRAAAADELIAAAGGPVHNPDDFAALVAKIRPDLGAAVARLV
RLVVPILAEAHRVSAALAETTERDIADDVRDQLDNLVFPGFISEWGSTRLRELPRYLQAA
VVRLAALPGSAARDRQGMLELDRALAAYDRLVNALPENRRHSPAVTEIWWMIEEFRISLF
AQKLGTPYPVSAKRIEKAISAIRR
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggacagctgacaccggaccccgcgagctccgcacccgcctggcgaatctctcc
ctccgcgacgaataccggctgaagcgccggctcgacaaagcgcgcggtggtgacctcggc
gcggtcgaggccgagatcgccgccgccgaactccgcatcgacgcgcgccgcgccgccgtc
ccggagatccgctaccccgagcagctgccggtcacccagcgccgcgaagacatcgccgcg
gccatcgccgcgcatcaggtggtgatcgtggccggcgagacgggttccggcaagaccacc
cagatcccgaagatctgcctggaactcggccgcggcatccgcggcaccatcggccatacc
cagccgcgcaggctggccgcgcgcaccgtcgccgaacgcatcgccgaggagctcggcacc
gaactcggcgacgtcgtgggctacacggtccgcttcaccgaccacgcctccgaccgcacc
ctgatcaagctgatgaccgacggcatcctgctcgccgagatccagcgcgaccggctgctg
cgccgctacgacacgatcatcatcgacgaggcgcacgaacgcagcctcaatatcgacttc
ctgctcggctacctcaaacagctgctaccgcgcagacccgacctgaaggtgatcatcacc
tcggccaccatcgatccggaactgttcgccaggcacttcgccgacgaaaaaggcgctccc
gccccgattgtcgaggtgtccggcaggtcctacccggtggagctgcgttaccggccgctc
tcgctggaactgccccgcgccgacgacgaagacgacgaggacacccgggtggtggaccgc
gacccggtggacgccatcggcgacgcggtcaccgaactgttcgccgagggcgatggcgac
gtgctggtgttcctgtccggcgaacgcgagatccgggacaccgcggacgcactgcgcgac
ctgaaactaccgcggaccgaaatcctgccgctgtacgcgcggctgtccacggccgaacag
caccgggtgttcgcgccgcatccgggccgtcgcgtggtgctggccaccaatgtcgcggag
acctcgctgaccgtgcccggcattcggtacgtcgtcgacccgggaaccgcccgcatttcc
cgctactcgatgcgcaccaaggtgcagcggctgccgatcgaaccggtctcccaggcctcg
gcccggcagcgcgccggacgctgtggtcgcgtcgccgacggcatctgcatccggctgtac
gccgaggacgatttcgactcccggcccgcgttcaccgaaccggagatcctgcgcaccaac
ctggccgccgtcatcctgcagatgaccgcgctcgggctcggcgatatcgagaacttcccg
ttcgtggaggcgccggacaagcgcgcgatccgggacggcatcgcgctgctggaggaactc
ggcgcgctggggcggcgaaccggcaaggacgccgacacgcatgccgataccgggctgacg
ctcacgccgatcgggcgcgatatggcgcagcttccggtcgacccgcggatggcgcggatg
ctggtggaggcgcaccgcgggggctgcctggcggaggtgctgatcatcgttgcggcactg
tcgattcaggatgtgcgtgagcgacccgccgacaatcagcaggccgccgataccaagcac
gcgcgcttcactgtcgagggctcggacttcctcgcctatctgcgcctgtgggattacctc
accgagcagcgcaaatcattgtccgccaatcagttccggcggatgtgccgggaggagttc
ctgcactatctgcgaatcagggagtggcaggatctgcacgggcagttgcgcacgatcacc
aaggggctcgggtggtcgacagaggacggcgccgccacgcaagctgccggaacgcggcgc
gagggcgccgaaaccgcgggcgccgatggacagtcggacagcgagtcgcgcggcgggcga
tcacggggccgaaccgcggcgtcgggtcgaccggacgagaacagttcgcgccgtgcagca
gccgccaccagcgggcccgctggtggccggtccgggtcgcggcgacggcgctcgtccggc
cgtgccgccgactcctcgccccacgcggcggcagggtctaccgtggaatccgacggtgac
ccttgggattccgtcggcattcaccaagccctgctggcaggcatgctttcccatatcggg
ctgcgggaagccgaatcgcgggagttcctcggcgcgcgcaacgcgaagttcatgatcttt
cccggctcgtcgctggcgaagaaacccccgcgctgggtgatggccgccgagctggtcgag
acatcgcggctgtgggggcggatcacggccaaggtggagccggaatgggccgagcggctc
gccggcgatctggggaaacgcacctactccgaaccacattggtcggccaagcgcggcgct
gccagcgcctacgagcgcgtcacgctgtacgggatcccgctggtgaccggcagacaggtc
gattacggtcggatcgatcctgggctgtcgcgcgagctgttcatcaggcacgcgctggtg
cagggcgaatggcagacccgccacgagttcttccaccgcaaccgcgaattgatcgacgac
gtcgccgatctggagcaccgcgcgcgccgccgcgacatcctggtcgacgacgacgtgctg
ttcgagttctacgacaagcggttgcccgccgacatcgtctcggtgcgccatttcgacagc
tggtggaagtccgcgcgccggaaagaccccgcgctgctggacttctcgacatcgaccgtc
gtcaacgagaacgcggccgcgctggatccggccgccttccccgatgcgtggcggcagggc
gagctcagcttcccgctcacctaccaattcgaaccgggaaacgaggaagacggtgtcacc
gtacgcatcccggtcgagcagctggcccacgtgcgcgccgtcggcttcgactggctggtc
ccaggcatgcgcgacgagctggccgcggcgctgatcaaaacactgccgaaaacgttgcgg
cgcagcgttgttccggctccggacttcgcggcggcggccttggccgcgctcacgccgcgc
gcggagccgctacgcatcgggttggcgagggagctttcgcgcctgggttcgatcacgatc
gacccgagcgacctcgaccccggcgcgctgccggatcacctgcgaatgactttcgccgcc
gttgataccgagggccgggttctggcccgcagtaagagtctggcggcgctcaaaacccag
ttggccgagcaggtttccgcgtcggtcgcccgcgcgacagcgggtgcggaacgcgcaccc
gccgcggtgtggacgtcggaatcgctcggcacggtggagccgacggtgcgtcgcgaggtc
gccggacagaccgtcaccggctatcccgccctggttcccgagggtgacggggtggcggtt
cgagtgctcagctcccccgccgcccaggcggccgcgatgcgggcgggcacccggacgctg
gtcctgaacgcgctaccgacctcggtccgcaccgtcaccgcgggactaccacccaccgat
cgtcttgcgctgagccagaatccgtacggatcgctggaagcgctggtcgaggattgccgc
gccgcggccgccgacgagctcatcgccgccgcgggcgggcccgtgcacaatccggacgac
ttcgcggccctcgtcgcgaagatccgccccgatctcggcgccgcggtagcgcgactggtc
cggctggttgtcccgattctcgctgaggcacaccgggtttcggcggcgctggcggagacc
accgagcgcgatatcgccgatgacgtccgtgaccaactggacaacctcgtcttccccggt
ttcatctccgaatggggcagtacccggctgcgcgaactcccccggtacttgcaggccgcc
gtcgtccggctggcggctttgcccggttcggcggcgcgcgaccgtcagggcatgctcgag
ctggaccgcgccctcgccgcctacgaccggctggtaaacgcgctaccggagaaccggcgc
cacagccccgccgtgaccgaaatctggtggatgatcgaagaattccggatcagcctgttc
gcccagaagctcggaacgccctaccccgtgtccgccaagcgcatcgagaaggccatcagc
gcgatccgccgataa
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