KEGG   Nocardia iowensis: KV110_29235
Entry
KV110_29235       CDS       T07470                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
nie  Nocardia iowensis
Pathway
nie03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nie00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KV110_29235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nie03019]
    KV110_29235
Messenger RNA biogenesis [BR:nie03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     KV110_29235
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B_2 Lactamase_B Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: QXN95851
UniProt: A0ABX8S7I4
LinkDB
Position
complement(6341996..6343645)
AA seq 549 aa
MAKNGLRVFALGGIGEIGRNMTVFEYGGKLLIVDCGVLFPEDQQPGVDLILPDFRPIEHR
MDDVVAVVLTHGHEDHIGAVPFLLRLRSDIPVIGSKFTLALVAAKCREHRQQPKLVEVVE
GQHTTHGPFGCEFFAVNHSIPDALAVAIRTPAGVVLHTGDIKLDQLPLDGRLTDLAGFSR
LGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVIGKARNRVIVASFASHVHRIQQVVD
VAQKYGRRICFVGRSMVRNMQIAQDLGYLTVPDSVVVDLDQAATLPGDRLVLISTGSQGE
PLSALSRMARGDHRQINIREDDLVVLASSLIPGNENSVFAVVNGLARLGATVITQQNAKV
HVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAVATGVPEDRVMLAEDGVVVD
LVDGIASIVGRVPVGHVYVDGLSVGDVGESTLSDRLVLGEGGFISITVAIDETTGKAVST
PEVSGRGFSDDPTALTDAAELVEAELLRLATEGVTDIHRIAQSVRRVVGRWVADTYRRRP
MIVPTVIGV
NT seq 1650 nt   +upstreamnt  +downstreamnt
ctggccaagaacgggcttcgtgtcttcgcactcggcggcatcggcgaaatcggccgcaac
atgaccgttttcgagtacggcggcaagctgctcatcgtcgactgcggcgtgctgttcccg
gaggaccagcagcccggcgtcgacctgatcctgcccgacttccggcccatcgagcaccgg
atggacgatgtcgtcgccgtcgtgctcacgcacggccacgaggaccacatcggcgcggtg
ccgttcctgttgcggctgcgctccgacatcccggtcatcggctcgaagttcaccctcgcg
ctggtcgcggcgaaatgccgggagcaccgccagcagccgaagctggtggaggtcgtcgag
ggccagcacaccacccacggaccgttcggctgcgaattcttcgccgtcaaccactccatc
ccggacgcgctcgccgtcgccatccgcaccccggcgggcgtcgtgctgcacaccggcgac
atcaaactcgatcagctgcccctggacggtcgcctcaccgacctggccggtttctcccgg
ctcggcgatgaaggtgtcgacctgttcctggtggactccaccaacgccgaggttcccggc
ttcgtcacgccggaacgggagatcggcggcgtgctcgacacggtcatcggcaaggcgcgc
aaccgagtgatcgtcgcctcgttcgccagccatgtgcatcgcatccagcaggtcgtcgat
gtcgcccagaagtacggcaggcggatctgcttcgtcggccgctcgatggtgcgcaacatg
cagatcgcgcaggacctcggctacctgacggtgcccgacagcgtggtcgtcgacctcgat
caggccgcgacgctgcccggcgatcggctggtgctgatctccaccggttcgcagggcgag
ccgctgtccgcgttgtccaggatggcgcgcggcgaccaccggcagatcaatatccgcgag
gacgatctggtggtgctggcctcctcgctcatcccgggcaacgagaactcggtgttcgcg
gtggtgaacggcctggcccggctgggcgccacggtgatcactcagcagaacgccaaggtg
cacgtctccgggcacgcctcggccggtgagctgctctacctgtacaacgcggtgcgaccc
accaatgccatgccggtgcacggcgaatggcggcacctgcgcgccaacgccgcgctcgcc
gtcgcgaccggcgtgccggaggaccgggtcatgctcgccgaggacggcgtggtggtggac
ctggtcgacgggatcgcctcgattgtcggccgggtgccggtcgggcacgtgtacgtcgac
gggctatcggtcggcgacgtcggcgaatcgacgttgtcggaccgcttggtgctcggcgag
ggcgggttcatctcgatcaccgtcgcgatcgacgagaccaccggcaaggcggtcagcacg
ccggaggtcagcgggcgcggcttctccgacgatcccacggcgctcaccgacgcggccgaa
ctcgtcgaggccgaactgctgcggctggccaccgaaggagtcaccgatatccaccggatc
gcgcagagcgtgcggcgcgtcgtcggccgctgggtcgccgacacctaccgtcgtcgcccg
atgatcgtgccgacggtcatcggcgtctga

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