Nocardia iowensis: KV110_29235
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Entry
KV110_29235 CDS
T07470
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nie
Nocardia iowensis
Pathway
nie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KV110_29235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nie03019
]
KV110_29235
Messenger RNA biogenesis [BR:
nie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KV110_29235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QXN95851
UniProt:
A0ABX8S7I4
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Position
complement(6341996..6343645)
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AA seq
549 aa
AA seq
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MAKNGLRVFALGGIGEIGRNMTVFEYGGKLLIVDCGVLFPEDQQPGVDLILPDFRPIEHR
MDDVVAVVLTHGHEDHIGAVPFLLRLRSDIPVIGSKFTLALVAAKCREHRQQPKLVEVVE
GQHTTHGPFGCEFFAVNHSIPDALAVAIRTPAGVVLHTGDIKLDQLPLDGRLTDLAGFSR
LGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVIGKARNRVIVASFASHVHRIQQVVD
VAQKYGRRICFVGRSMVRNMQIAQDLGYLTVPDSVVVDLDQAATLPGDRLVLISTGSQGE
PLSALSRMARGDHRQINIREDDLVVLASSLIPGNENSVFAVVNGLARLGATVITQQNAKV
HVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRANAALAVATGVPEDRVMLAEDGVVVD
LVDGIASIVGRVPVGHVYVDGLSVGDVGESTLSDRLVLGEGGFISITVAIDETTGKAVST
PEVSGRGFSDDPTALTDAAELVEAELLRLATEGVTDIHRIAQSVRRVVGRWVADTYRRRP
MIVPTVIGV
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
ctggccaagaacgggcttcgtgtcttcgcactcggcggcatcggcgaaatcggccgcaac
atgaccgttttcgagtacggcggcaagctgctcatcgtcgactgcggcgtgctgttcccg
gaggaccagcagcccggcgtcgacctgatcctgcccgacttccggcccatcgagcaccgg
atggacgatgtcgtcgccgtcgtgctcacgcacggccacgaggaccacatcggcgcggtg
ccgttcctgttgcggctgcgctccgacatcccggtcatcggctcgaagttcaccctcgcg
ctggtcgcggcgaaatgccgggagcaccgccagcagccgaagctggtggaggtcgtcgag
ggccagcacaccacccacggaccgttcggctgcgaattcttcgccgtcaaccactccatc
ccggacgcgctcgccgtcgccatccgcaccccggcgggcgtcgtgctgcacaccggcgac
atcaaactcgatcagctgcccctggacggtcgcctcaccgacctggccggtttctcccgg
ctcggcgatgaaggtgtcgacctgttcctggtggactccaccaacgccgaggttcccggc
ttcgtcacgccggaacgggagatcggcggcgtgctcgacacggtcatcggcaaggcgcgc
aaccgagtgatcgtcgcctcgttcgccagccatgtgcatcgcatccagcaggtcgtcgat
gtcgcccagaagtacggcaggcggatctgcttcgtcggccgctcgatggtgcgcaacatg
cagatcgcgcaggacctcggctacctgacggtgcccgacagcgtggtcgtcgacctcgat
caggccgcgacgctgcccggcgatcggctggtgctgatctccaccggttcgcagggcgag
ccgctgtccgcgttgtccaggatggcgcgcggcgaccaccggcagatcaatatccgcgag
gacgatctggtggtgctggcctcctcgctcatcccgggcaacgagaactcggtgttcgcg
gtggtgaacggcctggcccggctgggcgccacggtgatcactcagcagaacgccaaggtg
cacgtctccgggcacgcctcggccggtgagctgctctacctgtacaacgcggtgcgaccc
accaatgccatgccggtgcacggcgaatggcggcacctgcgcgccaacgccgcgctcgcc
gtcgcgaccggcgtgccggaggaccgggtcatgctcgccgaggacggcgtggtggtggac
ctggtcgacgggatcgcctcgattgtcggccgggtgccggtcgggcacgtgtacgtcgac
gggctatcggtcggcgacgtcggcgaatcgacgttgtcggaccgcttggtgctcggcgag
ggcgggttcatctcgatcaccgtcgcgatcgacgagaccaccggcaaggcggtcagcacg
ccggaggtcagcgggcgcggcttctccgacgatcccacggcgctcaccgacgcggccgaa
ctcgtcgaggccgaactgctgcggctggccaccgaaggagtcaccgatatccaccggatc
gcgcagagcgtgcggcgcgtcgtcggccgctgggtcgccgacacctaccgtcgtcgcccg
atgatcgtgccgacggtcatcggcgtctga
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