Nocardia iowensis: KV110_34505
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Entry
KV110_34505 CDS
T07470
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nie
Nocardia iowensis
Pathway
nie03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nie00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KV110_34505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nie03019
]
KV110_34505
03009 Ribosome biogenesis [BR:
nie03009
]
KV110_34505
Enzymes [BR:
nie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KV110_34505
Messenger RNA biogenesis [BR:
nie03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KV110_34505
Ribosome biogenesis [BR:
nie03009
]
Prokaryotic type
rRNA helicases
KV110_34505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Cas3-like_C_2
UvrA_inter
HEM4
Motif
Other DBs
NCBI-ProteinID:
QXN90457
LinkDB
All DBs
Position
7485960..7487753
Genome browser
AA seq
597 aa
AA seq
DB search
MSTNQVDSVPGDNDRDTDGPTFADLGIDDRILAAIADVGYESPSPIQAATIPPLLSGADV
VGLAQTGTGKTAAFAIPILMGLDTSGKLPQALVLAPTRELAIQVAEAFGRYATHIPGLHV
LPIYGGQAYGVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLKYLVLDEADEMLKMGF
QEDVERILKDTPSTKQVALFSATMPAAIRKISKQYLNNPVEITVKSKTSTATNITQRWVQ
VSHQRKLDALTRVLEVESFEAMIIFVRTKQATEELAEKLRARGFSAAAINGDIAQNQRER
TIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAL
LFVAPRERHLLKSIERATRHPLEEMQLPSVDDVNAQRVAKFGDDITESLTSSNLALFRRL
IEDYEREHDIPLVDIAAALAVLSRDGDNFLMQPEPPEPVRERRERPERAPRRFEGDDDRT
GFGSHSRANGTELATYRISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVEL
PADLPPETLEALRRTRISGVLIQLTPDQGPPGQRSFTRGPRREGATAKRPERRKPRS
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccaatcaggtcgacagcgttcctggcgacaacgacagggacaccgacggcccg
accttcgccgatctcgggatcgatgaccgcatcctcgcggccatcgccgatgtgggctat
gagtcgccgtcgccgatccaggccgcgacgattccgccactgctcagcggcgccgatgtg
gtcggtctcgcgcagaccggcaccggcaagaccgcggcgttcgcgatcccgatcctgatg
ggtctggacacctccggcaaactcccgcaggccctggtgctcgcgccgacccgcgagctc
gcgatccaggtggccgaggcattcggccgctacgccacccatatccccgggctgcacgtg
ctgccgatctacggcggccaggcctacggtgtccagctgtccggcctgcgccgcggcgcg
cacgtggtggtcggcacgcccggccgggtgatcgatcacctggagaagggcacactcgac
ctgtcgcagctgaagtacctggtgctcgacgaggccgacgagatgctgaagatgggcttc
caggaggacgtcgagcgcatcctcaaggacacgccgtccaccaagcaggtcgcgctgttc
tcggcgaccatgcccgcggcgatccgcaagatctccaagcagtatctgaacaacccggtc
gagatcaccgtcaagtcgaagacttctaccgccaccaacatcacccagcgctgggtgcag
gtctcgcatcagcgcaagctggacgcgctcacccgggttctcgaggtcgagtcgttcgag
gcgatgatcatcttcgttcgcaccaagcaggccaccgaggagcttgccgaaaagctgcgc
gccaggggcttttccgcggccgccatcaacggcgacatcgcgcagaaccagcgcgagcgc
accatcggccagctcaagtccggtgcgctggacattctggtcgccaccgacgtcgccgcg
cgcggtctcgacgtggaccgcatttcgcacgtggtcaactacgacatcccgcacgacacc
gagtcctacgtgcaccggatcggccgcaccggccgggccgggcgcagcggtgaggcactg
ctgttcgtcgcgccgcgggaacggcacctgctcaagtcgatcgagcgggccacccggcat
ccgctggaggagatgcagctgcccagcgtcgacgacgtcaacgcgcagcgcgtcgccaag
tttggcgacgacatcaccgagagcctgacctcgtcgaacctggcgctgttccgcaggctc
atcgaggattacgaacgcgagcacgacattccgctggtcgacatcgcggccgcgctggcc
gtgctgtcccgcgacggcgacaacttcctgatgcagcccgagccgccggagccggtgcgc
gagcgcagggaacggccggagcgcgcgccacgccggttcgagggcgacgacgatcggacc
ggtttcggttcgcacagtcgggccaacggcaccgagctggccacctaccggatcagcgtc
ggcaagcggcaccgcgtggtgcccggcgcgatcgtcggcgccattgccaacgagggcggc
ctgcggcgcagcgacttcgggcacatcagcatccggccggaccacagtctggtggagcta
cccgcggacctgccgccggagacgctggaagcgttgcggcgcaccaggatcagcggcgtg
ctcatccagctgacgccggaccagggtccgccgggacagcgctcgttcacccgcggcccg
cgccgcgagggcgcgaccgccaagcggccggagcggcgtaagccacgctcctga
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