Nitrospira sp. KM1: W02_00580
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Entry
W02_00580 CDS
T08344
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nif
Nitrospira sp. KM1
Pathway
nif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W02_00580 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nif03019
]
W02_00580 (deaD)
03009 Ribosome biogenesis [BR:
nif03009
]
W02_00580 (deaD)
Enzymes [BR:
nif01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
W02_00580 (deaD)
Messenger RNA biogenesis [BR:
nif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
W02_00580 (deaD)
Ribosome biogenesis [BR:
nif03009
]
Prokaryotic type
rRNA helicases
W02_00580 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
AAA_19
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCA52918
LinkDB
All DBs
Position
62987..64726
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AA seq
579 aa
AA seq
DB search
MKSDATHPPASHTATGFSPGFAALGLEASLLTTLESLGYEEPTPIQREAIPPLLAGRNLL
GQAATGTGKTAAFALPLLQRIAHAGAKHRPSALVLVPTRELAIQVSEAVRRYGKELRTSV
LAVYGGQAIGPQFHALKRGVDVIVATPGRALDHIRRDTLKLGHVQVVVLDEADEMLDMGF
ADDLDAILEQTPPAKQTALFSATMPPRIKSIAQRHLKNSVEITIAKEPVKAGAAPRVLQT
AYVVTRAYRGATLARVIDMAAPKSALVFCRTRLEVDEVTAMLTGRGHRAEAIHGGMSQAQ
RDRVMQAFRTGQTELLVATDVAARGLDIPHVSHVVNYDLPSSAEVYVHRIGRTGRAGREG
AAITILDPREQRLLRSIEQHTKAKVTVSPVPSVTDLRAKRLQRTETAVRESLEAGDLDSF
EPVIERLSASSDPVKVAAAAVKLIFRAQGGARAEEDIPAMPIRPPDAHHSSGRYVRHPAD
RSHAARYDDRTSRGRSSERQTGTARIYIGAGRDAGIRPGDLVGAIANEAKVNSQMIGAIE
IEERFSIVDVPETAARGIIEVLARARIKGRKVTVRLFRE
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccgacgcgacccatccgcctgcttcccacaccgccacggggttttcccccggc
ttcgccgccctgggcctggaggcctcgttgctgacgacgctggagtcgctggggtacgaa
gaacccacgccgattcagcgtgaggcgattccgccgctcctggccggccgcaaccttctc
ggtcaagcggcaaccggaaccggtaagaccgccgcctttgcccttccactgctgcagcgg
atcgcgcatgcgggagcaaagcatcgcccttcggcgcttgtgctcgtcccgacgcgtgaa
ttggcgatccaggtgtcggaggccgttcgacgatacgggaaagaactgcgcacctcagtg
ctggcggtctacggcggtcaggccattggaccgcaatttcatgccctcaagcgcggtgtg
gacgtgattgtggcgaccccgggtcgcgcgctcgatcacattcgccgtgacacgttgaaa
ctgggtcacgtgcaggttgtggtgctggatgaagccgacgagatgctcgatatggggttc
gccgacgatttggatgccattctcgaacagaccccgcccgccaagcagacggcgcttttt
tccgccaccatgccgccacggatcaaatcgatcgctcaacggcatctcaagaattccgtc
gaaattacgatagccaaagaaccggtcaaggccggggcggctccgcgcgttctgcagacc
gcctatgtcgtgaccagagcgtatcgaggggcgacgcttgcccgcgtgatcgatatggcc
gcgccaaaatcggcgctggtgttctgccggaccaggctggaagtcgatgaagtgacggcc
atgctcaccggccgtgggcaccgagctgaggctatccatggtggaatgagccaggcgcag
cgcgatcgggtcatgcaggctttccgcaccggacagaccgagttgctggtggccaccgat
gtcgccgcgcgcggcttggacatcccgcatgtgtcgcatgtcgtcaattacgatcttcca
tcatccgcagaagtctacgtgcatcgcatcggccggacgggtcgcgcggggcgggagggc
gccgcgattaccatcttggatccgcgtgagcagcggctcttgcgcagcatcgagcagcac
accaaagccaaagtgaccgtctcgccggtcccttcggtgaccgacctgcgggcgaaacgt
ctgcagcggaccgagacggccgtgcgtgagtcgttggaggccggagacctggattctttc
gagccagtcatagagagattgtctgcgtccagtgatccggtgaaagtggcagcggctgcg
gtcaaactcattttcagggcacagggcggagcgcgcgccgaagaagacatccctgccatg
ccgatcagaccgccggatgcccatcattcatccggtcgttacgttcggcatcctgccgat
cgatcgcacgccgcacggtacgatgatcggacttcgagagggagatcctccgagcggcag
accggaacggcacgcatctatattggagcggggcgggacgccggcattagaccaggcgat
ttggtcggcgcaattgcgaatgaggccaaggtcaattcccaaatgatcggggcgatcgaa
atcgaggaacggttttctattgtggacgtacctgaaaccgctgcgcggggcattatcgaa
gtcctggctcgtgctcgaatcaagggccgtaaagtcaccgtgcggctctttcgagagtag
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