Nitrospira sp. KM1: W02_18670
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Entry
W02_18670 CDS
T08344
Symbol
rny
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
nif
Nitrospira sp. KM1
Pathway
nif03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nif00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W02_18670 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nif03019
]
W02_18670 (rny)
Messenger RNA biogenesis [BR:
nif03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
W02_18670 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
KH_KhpA-B
GvpK
HemY_N
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BCA54727
UniProt:
A0A679HWF0
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Position
complement(1979807..1981375)
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AA seq
522 aa
AA seq
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MTTSFVTLVLVGIVAALLGIGIYEAVRRMSQANRRVKEEEQARQAVQNAQREAENILKEA
KLEAKDLIFQSKAELEKEQKAKLAEMSVSEKRLVQREESIDKRISALDKRDSEFQKRDHE
CAKREEKLTAKEAACIQAEREHREALERVAGMTAEEAKKHLLQEMESQARLDAAGIAKRT
LEEARENAEREAREIITSSIQRVVRDYVSESTISVVPIPNDAMKGRIIGREGRNIRAIEA
ATGIDLIIDETPEAVIISGFDPLRREIAKVSLERLMHDGRIHPTRIEEIVDKVKVDIDKL
MYEEAEKIIFELGLSDFHPELIKVLGRLKYRTSYGQNNLYHAREAAYICGIMASELGLDV
KLARRGALLHDIGKAVSHEEEGPHAMLGADIAKKWGESEKIVNAIAAHHEQVEPICPESV
LVAAAEALSAARPGARREALESYVKRLEKLESLAHAQKGVQKAYAIQAGREIRVIVRQED
MSDTESFQLSRDLAKKIEQELTYPGQIKVTVIRESRYIEYAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgactacctcatttgtcacgctcgtgcttgtcggaattgtcgcagccctcttggggata
gggatctatgaagctgttcggcgtatgtcgcaagccaacagaagagtgaaggaggaagaa
caggcccggcaggcggttcaaaatgcgcagcgggaagctgaaaatattcttaaagaagcc
aagctggaagcgaaggacttgatatttcagtcgaaggcagaactggaaaaggaacagaag
gccaagctggccgaaatgtctgtgtccgagaagcgcttagttcagagagaagaatcgatc
gataagcggatcagcgcgctcgataaacgagacagtgagtttcagaagcgggatcacgag
tgcgcgaagcgggaagaaaagctcaccgccaaagaagcggcttgtatccaagctgagaga
gaacatcgggaagcattggaacgtgttgcaggcatgactgccgaagaggccaagaagcat
cttctgcaggaaatggaaagccaggctagactcgatgcggcaggtattgcaaagcgaaca
ttagaagaagcgagggaaaatgccgaacgcgaggcgcgggagatcattacgagttccatc
cagagggtcgtccgtgactatgtgtcggagtcgaccatctccgtcgtgccgattcctaat
gatgcaatgaagggacgcatcatcggacgggagggtcgaaatattcgggcgatcgaagcg
gctactggcatagatctgatcatcgatgaaacgccggaggcggtcattatatccggattc
gatcctctacgcagagagattgcaaaggtatcgcttgagcgtctgatgcacgacggtcga
atacatcccacaaggatcgaggaaatcgtcgacaaggtgaaagtcgacatcgacaagctg
atgtacgaagaagccgaaaaaatcatttttgaattgggcctgtccgattttcatcccgag
ctgatcaaagtgctcgggaggttgaaataccggaccagttatggccagaacaatttgtat
cacgcacgggaagccgcctatatttgtgggatcatggcctcggaattgggcttggacgtc
aagttagcgagacgcggcgctctcctgcacgacatcggcaaggccgtgagccatgaagag
gaaggccctcacgccatgctcggagccgacattgccaagaaatggggggaaagtgaaaaa
atcgtgaatgcgatcgccgctcatcatgagcaggtggagcctatttgtccggaatccgtg
ctggttgccgcggctgaggcgttatcggctgcgcggcccggcgcgagacgcgaggcgctt
gaatcctatgtgaagagactggaaaagctggaatcgctcgctcatgctcaaaaaggggtt
cagaaagcctatgccattcaagctgggcgcgagatccgcgtgatcgtgcggcaggaagat
atgtccgatacggaatcgttccagttgtctcgcgacctcgcgaaaaaaattgaacaggaa
ctgacctatccaggacagatcaaagtgacagtgattcgggaaagtcggtacatcgagtac
gcaaaatga
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