Nitrospira sp. KM1: W02_40240
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Entry
W02_40240 CDS
T08344
Symbol
ymfC
Name
(GenBank) 23S rRNA pseudouridine synthase
KO
K06181
23S rRNA pseudouridine2457 synthase [EC:
5.4.99.20
]
Organism
nif
Nitrospira sp. KM1
Brite
KEGG Orthology (KO) [BR:
nif00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nif03009
]
W02_40240 (ymfC)
Enzymes [BR:
nif01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.20 23S rRNA pseudouridine2457 synthase
W02_40240 (ymfC)
Ribosome biogenesis [BR:
nif03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
W02_40240 (ymfC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
BCA56884
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All DBs
Position
4187677..4188285
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AA seq
202 aa
AA seq
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MSRIQKRARTETLALNKPYGVLPSFTDPEGRPTLSRFVDVPGVYPAGRLDRDSEGLLILT
SDGMLAHRITDPRHKLPKVYFVQVERVPGEAALQELRDGVLLGEVRTRPAHVRLLSEEPT
LPERPVSIRFRKSVPTAWLEMTIHEGMNRQVRRMTAAVGHPTLRLVRIAIGPVQLGNLAS
GEWRPLTGSELALLRPERPHPP
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
atgagccggatccagaaacgtgcgagaacggaaacgcttgcgctgaacaaaccgtacgga
gtgctgccttcttttactgatcccgagggacgcccgacgctctcgcggttcgtcgatgtg
ccgggtgtatacccagccgggcgcctggaccgggacagcgagggccttttgatcctcact
tccgatgggatgctggcgcatcggatcaccgaccctcgtcataagcttcccaaagtctat
ttcgtgcaggtcgaacgtgttccgggcgaagcggctctgcaagagctgcgcgacggagtg
ctcctcggcgaagttcggacaagaccggcccatgtccggctgctctcggaggagccaaca
cttccggagcgtccggtttcgatcaggttcagaaaatccgttccgacagcatggttggaa
atgacgatccatgaaggcatgaaccgccaggtccgtcgcatgaccgcggcagtgggacat
ccaaccctgcggctggtgcgcatcgcgatcggtccggtccaactcgggaatttggcatcc
ggcgaatggcgcccgttgaccggttctgaactcgcgttgcttcgaccggaacgcccgcat
ccaccttga
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