Nitrospira sp. KM1: W02_40790
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Entry
W02_40790 CDS
T08344
Name
(GenBank) Exodeoxyribonuclease III Xth
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
nif
Nitrospira sp. KM1
Pathway
nif03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nif00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
W02_40790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nif03400
]
W02_40790
Enzymes [BR:
nif01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
W02_40790
DNA repair and recombination proteins [BR:
nif03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
W02_40790
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
BCA56939
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All DBs
Position
complement(4248855..4249736)
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AA seq
293 aa
AA seq
DB search
MRIATWNVNSLKARLEKVLWWLDRAKPDVLLMQETKLADADAPVRTFEQAGYELVHHGEG
RWNGVAIASRCGIGGVITNFGEPLRLARTSETGDDEPLAEARMLAAECSGVRTICVYAPN
GREIDSPFYMAKLAWFDRLARWINQAVTPDTPAVIGGDFNVAPEDIDVWDPRTCAGGTHV
SDRERQAFARLSRAGFVDAYRLHHPEPGRYTWWDYRAGNFHKNFGMRIDHLLVTTSLKHR
VVWAEIDREARKGKPLPSDHTPLVIDIDSPGQPFDAGWSSADSRIAARLRKMP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatcgcaacttggaatgtcaactcgctgaaggctcgacttgaaaaagtcctatgg
tggctggatcgggcaaagccggacgtgctgctgatgcaggaaacgaagctggcagacgcg
gatgcacctgtcagaaccttcgagcaggcaggatacgagctggtccatcatggcgaaggt
cgatggaacggcgtggcgatcgcgagccggtgtggcattggcggtgtcatcacaaatttt
ggcgagccgttacggctggcgcgaacctctgaaaccggtgatgatgaaccgttggctgag
gcgagaatgctggcggccgaatgcagcggcgtgcgcaccatctgtgtatacgcgccgaac
ggccgggagatagattcgccgttttatatggcgaagctcgcgtggttcgacaggctggcc
cgctggatcaatcaggccgtcactcctgatacaccggcagtcatcggcggcgatttcaat
gtggcgccagaggatatcgatgtgtgggacccacgcacctgcgctggcggtacacatgtc
tcagatcgcgagcgacaggcttttgcacggctttcgagggcgggattcgtcgatgcgtac
cgattgcatcacccggaacccgggcggtacacgtggtgggactaccgcgcgggcaatttc
cataaaaacttcggcatgcgcattgaccacttattggtaaccacctccctaaaacaccgc
gttgtctgggccgagatcgatcgcgaggctcgcaagggaaaaccgttaccctcggatcac
acaccgctggtcatcgatattgatagccctggccaaccgttcgatgccggctggtcttcg
gccgattcgcgaattgcggcgcgcctgcggaagatgccctga
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