Nissabacter sp. SGAir0207: C1N62_16025
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Entry
C1N62_16025 CDS
T09781
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nig
Nissabacter sp. SGAir0207
Pathway
nig03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1N62_16025 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nig03021
]
C1N62_16025 (rpoC)
03400 DNA repair and recombination proteins [BR:
nig03400
]
C1N62_16025 (rpoC)
Enzymes [BR:
nig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1N62_16025 (rpoC)
Transcription machinery [BR:
nig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1N62_16025 (rpoC)
DNA repair and recombination proteins [BR:
nig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1N62_16025 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QCR37475
UniProt:
A0A4P8SPM5
LinkDB
All DBs
Position
complement(3595540..3599760)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEDVKNTEGEWESKTSLVDTTIGRAILWMIVPNGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKTCDLLEENSVDAVKVRSVVGCETDFGVCAYCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
TNAKHVTNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGQEVSAGETVANW
DPHTMPVISEVSGFIRFADMVDTQTITRQTDELTGLSSIVVLDSAERTGSGKDLRPALKI
VDASGDDVLIPGADMPAQYFLPGKAIVQLEDGIQINAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKGTIASAGSSEFLEGEQAEVSRIKIANRQLEADGKIAATYHRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAQNEEQV
APQVSAEEATANLAELLNAGLGGDDE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcctggtcttttggtgaagttaaaaag
ccggaaacgatcaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atctttgggccggttaaagattacgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacccagactaaagtgcgccgtgag
cgtatgggtcacatcgagctggcttctccgactgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgctggacatgccgctgcgtgatatcgaacgtgtactctac
tttgagtcctacgtggtggttgaaggcggcatgaccaacctggagcgtcgtcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggcgatgagttcgacgcgaagatg
ggcgccgaagctatccaggccctgttgaaaaacatggatctggaagcagagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactctgaaaccaagcgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtctggcaacaagccggagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtccgctggttccgctggatggtggtcgtttc
gcaacgtccgatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagacgccctgctggacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtccctggcagacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgtgttgactactccggtcgttccgttatcaccgtaggcccgtac
ctgcgtctgcaccagtgcggcctgccgaagaagatggcgctggagctgttcaaaccgttc
atctacggcaagctggagctgcgtggcctcgcgaccaccatcaaagctgctaagaagatg
gttgagcgtgaagaagcggtagtctgggatatcctggacgaagtgatccgtgagcacccg
gtactgctgaaccgtgcgccgaccctgcaccgtctgggtatccaggcgttcgagccggta
ctgatcgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacatcctgtcccctgcgaacggcgagccaatcatc
gttccgtctcaggacgttgtactgggcctctactacatgacgcgtgactgtgttaacgcc
aaaggcgaaggcatggtactgactgggccgaaagaagctgagcgcatctaccgcgctggc
ctggcgtccctgcatgcacgtgtaaaagtccgtatcactgaagatgtgaagaacacggaa
ggcgagtgggaatccaagacctctctggtggacaccaccattggtcgtgcgatcctgtgg
atgattgtgccgaacggcctgccgttctccatcgtcaaccagccgctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattttgggcctgaagccgaccgttatcttc
gctgaccagatcatgtataccggctttgcgtatgcagcacgttctggtgcgtccgttggt
atcgacgacatggttatcccggagaagaaagccgagatcatcgaagaagccgaaaccgaa
gtggccgagatccaggagcagttccagtctggtctggttaccgcgggcgagcgttacaac
aaagtcatcgatatctgggccgcggcgaacgagcgcgtggcgaaggcgatgatggaaaac
ctgtctgttgaagacgtggttaaccgtgacggcgaagttgagcagcaggtttcgttcaac
agcatcttcatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gccggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtacttcagtacttcatctcgacccacggtgcgcgt
aaaggtctggcggataccgcactgaaaactgcgaactccggttacctgacccgtcgtctg
gttgacgtggcgcaggatctggttgtgaccgaagacgactgtggcacccacgaaggcatc
ctgatgactccggttatcgagggtggcgacgtgaaagagccgctgcgtgagcgtgtactg
ggtcgtgtaactgcagaagacgtactgaagccgggtacggcggacattctggtgccgcgt
aacaccctgctgaacgagaagacgtgtgatctgttggaagagaactccgtcgacgccgtg
aaagtacgctccgtagtaggttgtgaaaccgactttggtgtgtgtgcttactgctacggt
cgtgacctggcacgtggccacatcatcaacaaaggtgaagcggtcggtgttattgcagca
cagtccatcggtgagccgggtacccagctgacgatgcgtaccttccacatcggtggtgcg
gcatcccgtgcggcggcagagtccagcattcaggtgaagaacaagggcagcatcaagctg
accaacgcgaagcacgtaaccaactccaacggtaagctggttatcacctcgcgtaacacc
gaactgaagctgattgacgaattcggtcgtacgaaagagagctacaaagtgccttacggt
gcggtcatggcgaaaggtgacggtcaggaagtcagcgcgggcgaaaccgtcgctaactgg
gatccgcacaccatgccagttatcagtgaagtgagtggtttcatccgcttcgccgatatg
gtcgatacccaaaccattacccgccagactgacgaactgaccggtttgtcctctatcgtg
gtactggacagcgcagagcgtaccggtagcggtaaagacctgcgtccggcactgaaaatc
gttgacgccagcggcgacgacgtactgatcccaggcgcggatatgcctgcccagtacttc
ctgccgggtaaagcgattgttcagctggaagatggtatccagatcaacgcaggtgacacc
ttggcgcgtattccgcaggaatccggcggtaccaaggacatcaccggtggtctgccacgc
gttgctgacctgttcgaagcgcgtcgtccgaaagagccggcaatcctggctgagatcagc
gggatcatctccttcggtaaagagaccaaaggcaagcgtcgtctggtgatcaccccgctg
gatggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgtcgtatctgacggcccagagtccccgcacgacatc
ctgcgtctgcgtggtgttcacgcggtgacccgttacatcgtgaacgaagtgcaggacgtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgtaaaggcaccattgccagcgcaggcagctctgagttcctggaaggcgaacaggct
gaagtgtctcgcatcaagattgccaaccgtcagctggaagcagacggcaagatcgcagca
acgtaccatcgtgacctgctgggtatcaccaaggcatctctggcgaccgagtccttcatc
tctgcggcttcgttccaggaaacgacgcgtgttctcaccgaagcggcagttgccggtaag
cgtgatgaactgcgcggcctgaaagagaacgtgatcgtgggccgtctgatcccagccggt
accggttacgcttatcatcaggaccgtatgcgtcgccgcgcacagaatgaagagcaggtt
gctcctcaggtcagcgcggaagaagctacagccaacctggctgagctgctgaacgcaggc
cttggcggcgacgacgaataa
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