Nissabacter sp. SGAir0207: C1N62_16435
Help
Entry
C1N62_16435 CDS
T09781
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nig
Nissabacter sp. SGAir0207
Pathway
nig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1N62_16435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nig03019
]
C1N62_16435
03400 DNA repair and recombination proteins [BR:
nig03400
]
C1N62_16435
Enzymes [BR:
nig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N62_16435
Messenger RNA biogenesis [BR:
nig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1N62_16435
DNA repair and recombination proteins [BR:
nig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C1N62_16435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QCR37543
LinkDB
All DBs
Position
complement(3680800..3682629)
Genome browser
AA seq
609 aa
AA seq
DB search
MSTAAVINKALLAEQVLRDTFGYQQFRPGQQTIINTALEGRDCLVVMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSSQTREQQYEVMTGCRNGQIKMLY
IAPERLMMDNFLDQLPQLNPSLLAVDEAHCISQWGHDFRPEYRALGQLKARYPNLPVIAL
TATADEATRNDIVRGLALHEPLVQISSFDRPNIRYTLVEKYKPLDQLWRFVQDQRGKSGI
IYCNSRAKVEDTAARLQARGLSVGAYHAGLESERRAQVQDAFQRDDLQVVVATVAFGMGI
NKPNVRFVVHFDIPRTIEAYYQETGRAGRDGLPAEAILLYDPADMAWLRRCLEEKPAGPQ
QDVERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQTPCGNCDICLDPPKRYDGLLDAQKAL
SAVARVGQRFGIGYVVEVLRGANNLRIRENGHDKLTIYGMGRDQTTEHWVSVYRQLIHLG
LISQNIALHSALQLTEAARPVLRGETPLQLAVPRIQAPKARSSTPKSYSGNYDRKLFAKL
RKLRKSIADEANVPPYVVFNDATLLEMAEQMPASPGELLSVNGVGQRKLERFGAPFLQMI
RDHIDNDDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggcagtaatcaacaaagcgttgctggcagagcaggtgttgcgtgacacc
ttcggctaccagcaattccgtccgggtcagcaaaccatcatcaacaccgcgctcgaaggg
cgcgactgtctggtggtcatgcccaccgggggcggcaaatccctgtgttaccaaatccct
gccttggttatggatggcctgacgctggtggtctcgccgctgatctccctgatgaaagac
caggtggatcagctgctggccaacggcgtggcggcggcgtgcctcaactccagccagacg
cgggagcagcagtatgaggtgatgaccggctgccgcaacgggcagatcaagatgctctac
atcgcgccagagcggctgatgatggacaacttcctcgaccagttgccgcagcttaacccg
tcgctgttggcggttgacgaagcgcactgtatttcccagtgggggcacgatttccgcccc
gaataccgtgcgcttgggcaactgaaggcgcgttacccgaatctgccggtcatcgccctg
acggcgacggccgacgaagccacgcgcaatgacatcgtgcgcgggctggcgctccatgag
ccgctggtgcagatcagcagctttgaccgccccaacatccgctacacgctggtagagaag
tacaagcccctcgaccagctgtggcgctttgtgcaggatcagcgcggcaagagcggcatc
atctactgcaacagccgggcgaaggtggaagacaccgccgcccgcctgcaagcgcgcggc
ctcagcgtgggggcctaccacgccgggctggagagcgagcggcgcgcacaggtgcaagac
gccttccagcgcgatgacttgcaggtggtggtggcgaccgtggcgttcggcatgggcatc
aacaagcccaacgtgcgctttgtggtgcactttgatattccgcgcaccatcgaggcctac
taccaagaaaccggccgcgccgggcgtgacggcctgccagccgaggcgattctgctctat
gatccggccgacatggcctggctgcgccgctgtctggaggagaaacccgccgggccgcag
caggacgtggagcgccacaagctgaacgcgatgggcgctttcgctgaggcgcagacctgc
cgccggctggtgctgctcaactactttggcgaggggcggcagacgccgtgcggcaactgc
gacatctgcctcgatccgccgaagcgctatgacggcctgctcgatgcgcaaaaagcgctc
tccgccgtggcgcgcgtcggccagcgctttggtatcggctatgtggtggaggtgctgcgc
ggggccaataacctgcgtatccgtgaaaacggccatgacaagctgacgatctatggcatg
ggccgtgaccagaccaccgagcactgggtcagcgtctatcgccagctgatccacctcggc
ctgatcagccagaacatcgcgctgcactcggcgctgcaactcaccgaggcggcgcgtccg
gtgctgcgtggcgagacgccgctgcaactggcggtgccgcgcattcaggcacccaaggcg
cgcagtagcacgccgaagagctacagcggcaactatgaccgcaagctgttcgccaaattg
cgcaagctgcgcaaatcgatcgctgacgaggccaacgtgccgccctacgtggtgttcaac
gacgccacgctgctggagatggccgagcagatgccagcttcgccgggcgaattgctcagc
gtcaacggcgtcggccagcgcaagctggagcgctttggcgcgcccttcctgcagatgatc
cgcgaccatatcgacaacgacgacgaatga
DBGET
integrated database retrieval system
