Nitratiruptor sp. YY08-10: NitYY0810_C0416
Help
Entry
NitYY0810_C0416 CDS
T10768
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
nih Nitratiruptor sp. YY08-10
Pathway
nih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NitYY0810_C0416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nih03400
]
NitYY0810_C0416
DNA repair and recombination proteins [BR:
nih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NitYY0810_C0416
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NitYY0810_C0416
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
DUF87
Kinesin
SWI2_SNF2
UB2H
ABC_tran
Microtub_bd
AAA_22
PolyA_pol_RNAbd
Flavoprotein
DUF1128
Motif
Other DBs
NCBI-ProteinID:
BCD59664
LinkDB
All DBs
Position
complement(344299..346329)
Genome browser
AA seq
676 aa
AA seq
DB search
MAKFEMTTPYPPAGDQPQAIEKLSLSIKEGNRYQTLLGVTGSGKTYTMAKIIEKLQMPTL
IMTHNKTLAAQLFSEFKHFFPKNHVEYFISYYDYYQPEAYLPRQDLFIEKDSSINEELER
LRLSATASLLEYDDVIVVASVSANYGLGNPNEYRKMVFKFEVGNEIGQRELLFRLLEMGY
KRNDKFFDRGDFRVSGDVVDIYPAYFEDEAIRVEFFGDEIESIYYFDPLTNKKLQELQTI
TLYAANQFIVGQNRLAEAIKSIEKELEERLNYFLQENKLVEYQRLKQRTEFDLEMLETTG
TCKGIENYSRHLTGKKPGKTPYSLIDYFEAKGKPYLIIVDESHVSLPQFRGMYAGDRSRK
EVLVEYGFRLPSALDNRPLKFDEFINKAPHYLFVSATPGELELELSSVVAEQIIRPTGLL
DPLVELAPSRHQVEILHDEIKKETAKGNKVLVTTLTKKMAEDLSKYYADLGIKVRYMHSE
IDAIERNQLIRGLRRGEFDVLIGINLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTM
GRAARNAEGRVVMFADKIEQRTVLHNLEDLNAVEDKITGSMQRAIKTTIERRLKQDAFNK
AHGIIPKTVHRRLDENLKSEDLDKLYEKRKKMDKLPAKEKEKIIKELRKAMHEAAKRLEF
EEAARLRDETEKIKAL
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaaatttgaaatgacaactccctatccaccagcaggggatcagcctcaggctatc
gaaaaactctcactctccattaaagagggaaaccgctatcaaacccttcttggcgttacc
ggaagcggcaaaacttatacgatggcaaaaatcatagaaaaattgcagatgccaacgctc
atcatgacgcacaataaaacgttggcagcccagcttttcagcgaatttaaacactttttc
ccaaaaaatcatgtagagtacttcatcagctactatgactactatcagccagaggcgtac
ttgccaagacaagatcttttcatagaaaaagacagctccatcaatgaagagctggagcgt
ctcagactctcagccactgcaagtctgctggagtatgatgatgtgatcgtcgttgcttca
gtcagcgccaattacggacttggcaacccaaatgaatatcgaaaaatggttttcaaattt
gaggtaggcaacgagatcggccaaagagagctactctttcgtctccttgagatggggtac
aaacgaaacgacaaatttttcgatcgcggtgattttcgtgtcagtggcgatgtcgtagac
atttatccggcttattttgaagatgaagcgatacgagtagagttttttggggatgaaata
gagtctatttactattttgatccacttaccaacaaaaagctgcaagagctgcaaacgatc
actttgtatgcggcaaatcagtttatcgtaggacaaaatagactcgccgaagctataaaa
tcgatagaaaaagagctcgaggagcgactgaactactttttacaagaaaacaaactggta
gagtatcagcgtcttaaacaaagaacggagtttgacctggagatgcttgagaccacaggg
acgtgtaaaggaatcgaaaactactcaagacatctcacaggcaaaaagccgggtaaaaca
ccctactctcttatcgactatttcgaagccaaaggtaaaccctacctcattatcgtcgat
gagtctcacgtgagtctgccacagtttcgcggtatgtatgccggagacagaagtcgaaaa
gaggtgctggtagagtatggtttcagacttcctagcgctctggataacagacccttaaaa
tttgatgagtttatcaacaaagcgccacactatcttttcgtctcggcaacaccgggagag
cttgagctggaactctcaagtgtagtagctgaacagatcattcgtccaacgggccttctt
gatcctttggttgaacttgctcctagtcgccatcaggtagagatccttcacgatgagatc
aaaaaagagacagccaaaggcaacaaagttttggttacgacactcaccaaaaagatggca
gaagacttgagtaaatactacgccgatcttggtataaaagtgcgatatatgcactcagag
attgatgcaattgagagaaatcagcttatcagaggtctacgaagaggagagtttgacgta
ctcataggcatcaacttgcttcgagaagggttggatttgccggaagtaagccttgtagct
attttggatgcagacaaagaagggtttttgcgtagtgaaacgagtctcatccagactatg
ggacgagctgccagaaatgccgagggccgagtagtgatgtttgcagacaaaattgagcaa
agaacagtcttacacaatttagaagatttaaacgcagtagaagacaaaatcacaggctcg
atgcaaagagccatcaaaacgacaatcgaaagacgactcaaacaggatgctttcaacaaa
gcccacgggatcataccaaagactgtgcacagaagactcgatgaaaatctcaaatccgaa
gacctggacaaactctacgaaaaaagaaaaaagatggataaactcccggccaaagaaaaa
gagaagatcatcaaagaattacgcaaagcgatgcatgaagcagcaaaaagattagaattc
gaagaggctgcaagactcagagacgaaacagaaaagatcaaagcgctatag
DBGET
integrated database retrieval system
