Nitratiruptor sp. YY08-10: NitYY0810_C1535
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Entry
NitYY0810_C1535 CDS
T10768
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nih Nitratiruptor sp. YY08-10
Pathway
nih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NitYY0810_C1535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nih03021
]
NitYY0810_C1535
03019 Messenger RNA biogenesis [BR:
nih03019
]
NitYY0810_C1535
Transcription machinery [BR:
nih03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NitYY0810_C1535
Messenger RNA biogenesis [BR:
nih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NitYY0810_C1535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
AAA_22
AAA_25
Spore_III_AA
OB_RNB
AAA_18
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BCD60757
LinkDB
All DBs
Position
1430771..1432135
Genome browser
AA seq
454 aa
AA seq
DB search
MSEKNSNQNELSEENSTSTQNTEQKNNHKRTHIPVEGYTIEELRTKTIDDLLAIAGELGI
ENPQELKRQDLMFEILKNQVSKGGYILFTGILEITPEGYGFLRAINENFSNSANDAYVSA
TQIRRFALRTGDIVTGQVRPPKDQERYYALLKIEAINYLPPEESKRRPLFDNLTPLYPTE
RLKLEYDPTRLTGRVLDLFTPIGKGQRALIVAPPRSGKTELMKELAHGIAKNHPEVELIV
LLVDERPEEVTDMERSVKGEVYSSTFDMPAKNHVRVAELVIEKAKRRVEMGKDVVILLDS
ITRLARAYNTVTPSSGKVLSGGVDANALHKPKRFFGAARNIEEGGSLTIISTALIDTGSR
MDEVIFEEFKGTGNCEIVLDRRIADRRIYPAIDVLKSGTRKEELLVDPNTLPKIWALRNA
MQSMDEVEALKFLYSKMLKTKNNEEFLSIMNEGA
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaaaaatagcaaccaaaatgaattgagcgaagaaaactccacttctactcaa
aatacagagcaaaagaacaatcacaaacgaacccacatacctgtggaaggttacacgata
gaagaactacgaacaaagacgatcgacgatcttttagcaattgccggtgaactcggcatc
gaaaacccgcaagagcttaaacgtcaagatttgatgtttgaaattttaaaaaaccaggtg
agcaaaggcgggtatatcctctttaccggcattttggagatcactcctgaagggtatgga
tttttacgagccatcaacgaaaacttctccaacagtgccaacgatgcgtatgtcagtgct
acgcagatacgaagatttgcccttcgaacgggagatatcgtcacaggtcaagtccggcct
ccaaaagatcaggagcgctactacgctcttttgaaaattgaagcaatcaactatctgcca
ccggaagagtccaaaagaagaccactttttgataacctcacaccactctatccaacagag
cggctcaaactagaatacgacccaacacgtcttacaggcagagtgcttgatctttttact
cccataggaaaagggcagcgggctctcatagtcgcaccaccaagaagtggaaaaacggag
cttatgaaagagcttgcccacggtatcgcaaaaaatcatccagaagtggaactcattgtc
cttttggttgacgaaagaccagaagaagtgaccgatatggagcgaagcgtcaaaggagaa
gtctacagttccacattcgacatgccagcaaaaaaccatgtccgcgtagctgaactcgtc
atcgaaaaagcaaaacgacgtgtagagatgggcaaagatgtggtgatcttgcttgattcc
atcactcgccttgcaagagcatacaataccgtaacaccatcaagcgggaaagtgcttagc
ggtggggtcgacgccaacgctttgcataaaccaaaacgattttttggggctgcaagaaac
atcgaagagggtggaagtctcaccatcatctcaactgccctgatcgataccggttcacgt
atggatgaagtaatttttgaagagttcaaaggaacaggaaactgcgaaattgttctcgat
cgccgcattgcagatcggcgtatctatccagcaatcgacgtgctcaaatctggcaccaga
aaagaggagcttcttgtcgatccaaatacattgccaaaaatctgggctcttcgcaatgca
atgcagtccatggatgaggtagaggcattgaaatttttatattcaaaaatgttaaagacc
aaaaataacgaagagtttctctctatcatgaatgaaggggcctaa
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