Nitratiruptor sp. YY08-10: NitYY0810_C1541
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Entry
NitYY0810_C1541 CDS
T10768
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nih Nitratiruptor sp. YY08-10
Pathway
nih03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NitYY0810_C1541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nih03400
]
NitYY0810_C1541
Enzymes [BR:
nih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NitYY0810_C1541
DNA repair and recombination proteins [BR:
nih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NitYY0810_C1541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_16
AAA_30
TsaE
nSTAND3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BCD60763
UniProt:
A0A7R6V819
LinkDB
All DBs
Position
complement(1436538..1439456)
Genome browser
AA seq
972 aa
AA seq
DB search
MVARFYEYLKTNIPQILVVADEKEAQQASSAAKVLGIDHYILPDFRAQYGDDLRVFKEEL
DELFAVLNDYYHTPKMLIAPVHTIAKPMPVQRYFARKKIEFGDEFELESLKELLYQWGYT
FVDIVESKGEASFRGDIVDIFVPNLDKPIRLSFFDTQIESIRYFDPQTQKSIKEELEAFT
LYPAFLIQDEALQEAIEQSDFDVFDKDLLSVGFWVAERASLLEGKEAVRSGSFDLEELYS
YEGLIPKEQLIALPIVPEAKEYHEIEVLDINRVIQTKQNKKIKVLVKSQEFARRSSIKEL
EKIEFIYTDAILNIEGPNEVILSLNKPKKRRAKPPSIVIDELQPGSYVVHEQHGIGIFKG
LKAIEILGAKRDFVELEYAGGDKLLVPVENLDVLSRYIADSGSVAVVDKLGSQSFAKLKA
KVKERLFEIAADIVKIAAQRELTPGKKIITPPDIALFQSHAGFEYTEDQKKAIDTILQRL
SSGKVMDMLLSGDVGFGKTEVAMNAIYAVVKNGYQAAVVVPTTLLSAQHYESLVKRLEPF
NISVTKIDRFVTAKEKKERLQALKEGTIDVVVGTHALFGAEFKNLGLVVIDEEHKFGVKQ
KEKLKAFSKDVHLLSMSATPIPRSLNMALSQLKDLSEIRTPPQNRKPVRTYVKEYQDKLV
KEVILRELRRGGQVFYIYNSIAGIEEKKEDLQQLLPGKKILVLHSKIAAATTEKELLRFS
RGEYDILLSTSIVESGIHMPNVNTIIVEGADRFGIADLHQLRGRVGRGGKEGFCYYLVED
KQKLTEEAKKRLIALESNSYLGSGAALAYYDLEIRGGGNIIGAQQSGHIKNIGYSLYLQM
LEETITKLTKGEIEEEPQVELKLSVNAYISSEVVREDRLKLELYRRLAQVKEPEEIAQIQ
EEIEDRFGKLDSFTKNFLDLIHIKLLALEHGIKKISNYNQNITFDFGDKKEMIKARSKDD
DDILKAVLQYLR
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggttgccagattctatgaatatctgaaaacaaacattccgcagattttggttgttgca
gacgaaaaggaagcacaacaagcaagcagcgcagcaaaagtacttggaatcgatcattac
attttgccagactttagagcccaatatggtgatgatctgcgtgttttcaaagaggagctt
gatgagctgtttgcggtattgaacgattactaccatacgccaaagatgctcatagcccct
gtacataccattgccaagccgatgccagtgcaacgctactttgcgagaaaaaaaatcgag
tttggggatgaatttgagcttgaatcattaaaggaactgctttatcaatggggatatacc
tttgtggatattgtagagagcaagggtgaggccagttttcgaggcgatatcgtcgatatc
ttcgtaccaaatcttgataagccgatccgtcttagtttttttgatacccaaatagaatcg
atccgctattttgatccccaaacccaaaaaagtatcaaagaggagcttgaagcatttacc
ctctatccagcctttttaatccaggatgaggctttgcaagaagcgattgaacaaagcgat
tttgatgtttttgataaggatctattgagtgtaggattttgggtggccgagcgggcttct
ttgcttgaaggaaaagaggcagtacgtagtggcagttttgatctagaagagctgtacagc
tatgaaggtctcatcccaaaagagcagcttatagcacttccaatcgtacctgaagcgaaa
gaatatcacgagatagaagttcttgatatcaatagagtcatccagacaaagcagaataaa
aagatcaaagtgcttgtaaaatcccaagagtttgccagaagaagcagtatcaaagagctt
gaaaagattgaatttatctataccgatgcgattttaaatatcgaaggacccaatgaggtt
atactctctctcaataaaccaaaaaagagaagagccaaacctccttctatcgttatcgat
gaactgcaaccaggaagttatgtagtgcatgagcagcatggtatcgggattttcaaagga
ctcaaagcgattgaaattttgggagctaaaagagattttgtggaactcgaatatgctgga
ggagacaagcttttggttccagtggaaaacctcgatgttctcagcaggtatattgccgat
agtggtagtgtagcagttgtggataagcttggcagccaatcttttgcgaaactcaaagca
aaagtaaaagagagactttttgaaatcgctgcagatattgtaaaaattgctgcacagcgt
gaacttactcctggtaaaaagatcattacaccaccagatatcgctctttttcaatcccac
gctggttttgagtataccgaggatcaaaaaaaagcgattgatacgatcttgcaaaggctc
tccagcgggaaagtgatggatatgcttctaagcggagatgtgggatttggcaagacagaa
gttgccatgaacgctatctatgccgtagtgaaaaatggctatcaagcggctgtagttgta
ccaacgacacttctatcggcccaacattatgagagtcttgtaaaacgattggagccattt
aatatttcagtaaccaagatcgatcgatttgtcactgctaaagagaaaaaagagcgcttg
caagccttgaaagagggaacgatcgatgttgtggtgggaactcatgcgctttttggagca
gaatttaaaaatttggggcttgttgttatcgatgaggagcacaagtttggcgtgaagcaa
aaagagaaactcaaagctttcagtaaagatgtgcatctattgagtatgagtgcaacgccg
attccaagaagtctcaatatggccctttcccagctcaaggatctcagcgaaatcagaaca
ccacctcaaaacagaaagcccgttcgaacctatgtaaaagagtatcaagacaaacttgtc
aaagaggtgattttgcgagagcttcgtagaggagggcaggtcttttatatctacaactcc
atcgctggaattgaggagaaaaaagaggatcttcagcagctcctgcccggtaaaaagatt
cttgtactgcactcaaaaatagcggcggctacaacggaaaaagagcttcttcgcttttcc
cggggcgaatatgatatcttactttccacttccattgtggaaagtggcatacatatgcca
aatgtcaatactatcatcgtagaaggagccgatcgattcggaattgctgatctgcatcag
ttgcgggggcgtgtaggacgaggcggaaaagaggggttttgctactatctggtagaggat
aaacaaaaactgaccgaagaagcaaaaaaacggctcattgcattagaatccaactcctat
cttggaagtggagcggctttggcctattacgatttggagattcgaggaggagggaatatc
ataggagctcagcaaagcggacatatcaaaaatatcgggtacagcctctatctgcagatg
cttgaagagacgatcacgaaactgacaaaaggggagatcgaagaggagccccaagtggag
cttaaactgagcgttaatgcctatatttcgagtgaagtggtacgtgaggatcgactcaag
ctggaactatacagacggcttgcccaagtcaaagagcctgaagaaatcgcccagatccaa
gaggagatcgaagatcgtttcggaaaactggacagctttaccaaaaactttttggatctt
atccatatcaagcttttggcattggaacatggaatcaaaaaaatttcaaactacaaccaa
aatatcacatttgattttggtgataaaaaagagatgatcaaagcaagaagcaaagatgat
gatgacattttaaaagcggtattgcagtatttgagataa
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