Nitratiruptor sp. YY08-10: NitYY0810_C1769
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Entry
NitYY0810_C1769 CDS
T10768
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nih Nitratiruptor sp. YY08-10
Pathway
nih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NitYY0810_C1769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nih03019
]
NitYY0810_C1769
03009 Ribosome biogenesis [BR:
nih03009
]
NitYY0810_C1769
Enzymes [BR:
nih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NitYY0810_C1769
Messenger RNA biogenesis [BR:
nih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NitYY0810_C1769
Ribosome biogenesis [BR:
nih03009
]
Prokaryotic type
rRNA helicases
NitYY0810_C1769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_30
AAA_19
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BCD60988
LinkDB
All DBs
Position
1644198..1645613
Genome browser
AA seq
471 aa
AA seq
DB search
MTFTDFNLKPQIMKAIDQAGFKEPSPIQKEAIPVVLAGKDMVGQAHTGTGKTAAFALPIL
NMLELDGEVEALVIVPTRELATQVSDEIFRLGKYLGIKTATVYGGSSYSRQLNHIANAAV
VVATPGRLLDLLKSGKIELNPKFVVLDEADEMLDMGFLDDIKAIFNYLPTNRQTLLFSAT
MPQAIKELAQQILHSPEFISITKKEVTNVNIKQFYYVVDEHERDEALIRLLDYKNPTKSI
IFCRMKIEVDRLAQFLEAQGYSAKGLHGDMQQRQREETIKAFKRGQIEILIATDVAARGL
DISDVSHVFNYHIPFDPESYVHRIGRTGRAGKEGIAISLVTPHEFKQLLRIQKEVGSSLI
NKEIPTSAEVKNEKQKSMLDMILSQEVSKEAIELVELLESQIDISTAALKLASMVIKNDT
VSGNERIGKSLKEIEKMLEQAKRELSRPQRSGGRNNRGYRGNRRGRNAHRR
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgacttttactgatttcaatctgaaaccccaaataatgaaagcgatagatcaagctggc
ttcaaagagccaagtcctatccaaaaagaggcgattcctgtcgtattagctggaaaagat
atggtgggccaagcccacacaggtaccggtaaaacggctgcttttgcgcttccaatttta
aatatgttagagctcgatggcgaagtagaagcccttgtgatcgttccaacgagagagtta
gctactcaggttagcgacgagatttttcgccttggaaaatatcttggcatcaaaacagcc
acagtctatggaggaagctcctattcaagacagctcaatcatatagccaatgcagcagtg
gttgtggctactcctggaagactattggatcttttaaaaagcggcaaaatcgaactcaat
ccaaaatttgtcgttttggacgaagcggatgagatgcttgatatgggctttttagacgat
ataaaagccatttttaactatcttccgaccaatagacaaactcttttgtttagtgcaaca
atgccacaggccatcaaagagttggctcaacagattctccactcacccgagtttatctct
atcacaaaaaaagaggtaacaaatgtaaatatcaaacagttttactatgttgtagatgag
catgaaagagacgaagcacttattcgtttactcgactataaaaacccaacaaaatcaatc
atcttttgccgtatgaaaatagaagtagatcgccttgcacaatttcttgaagcacaaggc
tacagcgcaaaaggactgcacggcgatatgcagcagcgtcaaagagaagagaccatcaaa
gcgtttaaacgaggtcaaattgaaattttaatcgccacagatgtagccgcgagaggacta
gacattagcgatgtcagccatgtttttaactaccatattccttttgaccctgaaagctat
gttcatagaatcggacgaacgggaagagccggaaaagaaggaatagcgatcagtttagta
actcctcatgaatttaagcaacttttacgcatccaaaaagaggttggaagctctttaatc
aataaagagattccaacctctgcggaagtaaaaaacgaaaagcaaaaatcgatgctggat
atgattctttctcaagaagtatccaaagaagcgatagaacttgttgaacttctcgaatca
caaatagatatctccacagctgcactcaaactggcttccatggttatcaaaaacgatact
gtcagtgggaacgaaagaatcggcaaaagtctcaaagagatcgaaaagatgcttgaacag
gcaaaaagagaactttccagaccccaaagaagcggcggacgcaacaatagaggatatcga
ggcaaccgaagaggccgtaacgcccatagacgataa
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