Nitrosomonas sp. Is79A3: Nit79A3_0197
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Entry
Nit79A3_0197 CDS
T01569
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nii
Nitrosomonas sp. Is79A3
Pathway
nii03410
Base excision repair
nii03430
Mismatch repair
nii03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Nit79A3_0197
03430 Mismatch repair
Nit79A3_0197
03440 Homologous recombination
Nit79A3_0197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nii03400
]
Nit79A3_0197
DNA repair and recombination proteins [BR:
nii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Nit79A3_0197
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Nit79A3_0197
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Nit79A3_0197
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
PhoU
Motif
Other DBs
NCBI-ProteinID:
AEJ00104
UniProt:
F8GFZ4
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All DBs
Position
complement(227282..229060)
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AA seq
592 aa
AA seq
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MSKITTRTYDSHTFEALSGSGLSPVLARIYAARGIENSSQLETELAHLVPFGQLKNITAT
AALLADAIAAKKRLLIVADYDSDGATACAVGIRILRKFGAIVDYLVPNRFEFGYGLTPEI
VHLAHTVKQPDILITVDNGIASVEGVSEANRLGMQVVITDHHLPGDELPAAMAIVNPNQP
GCPFPSKSIAGVGVIFYLMLALRAELRQRGAFTALGQEPNLAGFLDLVALGTVADVVKLD
SNNRILVQQGLQRIRKGRGCAGINALLQVSRREYQQISTYELGFMLGPRLNAAGRLDDMS
LGIECLITDDAAYASQIAKQLDELNRQRREIESTMQESALLKLEDTLKTRQPEIQAAYSI
CLFDADWHQGVIGILASRIKDKHHRPVIIFAPGNDGEIKGSGRSINGFHLRDALDLVAKR
HPELILKFGGHAAAAGLTIHAHHFEKFCDVFEQVAQTLLTPADLTRVIETDGDLETSDIN
LELVEYLDRQVWGQGFPQPSFNARFYVESQRIVGEKHLKLKLRKLDSSSQGQAARKSEDS
YDGILFFHNDPLPDLIDAVYRLQINEYNGKTTLQLLLEHWFHTESEVNDDAH
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaatcaccacccgtacgtatgattcgcatactttcgaagctctcagcggcagc
ggattatcgccggtacttgcgcgtatttatgccgcgcgcggcattgaaaattccagccag
cttgaaacagaactggcacacctggttccgttcgggcaactgaaaaatatcacggcgacg
gcagcgctgctggccgatgccattgcagcaaaaaaacgcctgctgatcgtagcggattat
gattccgatggcgcaacggcatgcgcggtcggaatccggattttgcgcaaatttggcgcg
attgttgattacctggtgccgaaccgttttgaattcggttacggactgaccccggaaatt
gtgcatttggcgcataccgtcaagcaaccggatatcctgattaccgtcgataacggcatt
gccagcgtcgaaggcgtgtctgaagccaaccggctgggcatgcaagtagtgattaccgat
caccatttgcctggggatgaattgcccgcggccatggccatagtcaatcccaatcagccc
ggctgcccttttccgagcaaaagtatcgccggtgtgggcgttattttctacctgatgctg
gctctgcgcgctgaattacgccagcgcggcgctttcaccgcattgggacaggagcccaat
ctcgccggatttcttgatctggtggcactgggaacggtcgccgatgtggtcaaactggat
agtaacaatcgcattttggtacagcaaggcctgcaacgcatccgcaaaggacgcggttgc
gcaggtatcaacgcactgttgcaggtgtcgcggcgggagtatcagcaaatctccacgtat
gaactgggcttcatgctgggcccgcgattgaacgcagccgggcggctggacgatatgtcg
ctgggtattgagtgcttgattaccgatgatgcagcgtatgcgtcacaaattgccaaacaa
ttggacgagcttaaccggcagcgccgcgaaatcgagtccaccatgcaggaaagcgcgtta
ctcaagctggaagacacgctcaaaacccggcaaccggaaatacaagccgcctacagtatc
tgcctgttcgatgccgattggcatcaaggtgtcatcggcatactcgcttcgcgcatcaaa
gataaacatcatcgcccggtcatcattttcgcacccggcaatgacggtgaaatcaaaggc
tccggccggtcgatcaacggctttcacctgcgcgatgcattggatctggttgccaagcgg
catcctgagctgatcctcaaattcggcggtcacgcagccgcagcgggattgacgatccat
gcccatcattttgagaaattctgcgatgtttttgagcaagttgcacaaaccctgctgaca
ccggccgatttaacgcgcgtgatcgaaaccgatggcgatttggagacttctgacattaat
ttggaactggttgaatacctcgaccggcaagtgtggggacaaggttttccgcaaccgtca
ttcaatgcgcggttttatgttgaaagtcagcgcatcgtaggtgaaaaacatttaaaactg
aaattaagaaaactggattccagtagccaaggtcaagcggcgcggaaatcagaggattct
tacgacggcattttgtttttccataacgacccgctgcccgatctcatcgatgcggtttat
cgtctacagatcaatgaatataatggcaaaacaactttacaattgctgctggagcattgg
tttcacacagagagtgaggtgaacgacgatgcacactga
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