Nitrosomonas sp. Is79A3: Nit79A3_0811
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Entry
Nit79A3_0811 CDS
T01569
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nii
Nitrosomonas sp. Is79A3
Pathway
nii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nit79A3_0811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nii03019
]
Nit79A3_0811
Enzymes [BR:
nii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Nit79A3_0811
Messenger RNA biogenesis [BR:
nii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nit79A3_0811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
RM44_endonuclase
NAD_binding_3
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEJ00686
LinkDB
All DBs
Position
887266..888747
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AA seq
493 aa
AA seq
DB search
MLFEQLGLSTDLMRAISDQGYTKPTPIQEQAIPIILDGNDVMGGAQTGTGKTASFTLPML
RRLEIYANTSMSPAKHPIRALILVPTRELAVQVHESVKTYGKYLPLRSTVIYGGVNIDAQ
INAVRSGIEILVATPGRLLDHLQQKTLGLSKIEIFILDEADRMLDMGFMPDIKQIIQLLP
EKRQNLMFSATFSEEIKKLASKILKNPVLIEVAKQNSVSELITHVVHPVDTTRKQELLIS
LIKRQKLHQVLVFTRTKQGADHLTKWLNHSGISSAAIHGDRNQLQRTQALTNFKQSLIPV
LVATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGTKGFAISLVSQEEKKLLI
DIERVLGIKVRIEQIEGFELRNKNPSLSDNATSILNSKLKSNTLPQQIKKELFVKNNSTA
DHFKKEVISKLRNTRRSEKMVDPLFTQPYVSTGSDVKNVKDDSNVLNKKGIHKKHSNRPL
PALFISPVIGKQK
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgttatttgagcaactcggtttatcaaccgatttaatgcgtgctatctctgatcagggg
tatacgaaaccaaccccaattcaagaacaagctattccaataatacttgatggcaacgat
gtaatgggcggtgctcagacaggcacaggtaaaacagcaagtttcacccttcctatgttg
cgaagacttgaaatttatgcaaatactagcatgtcaccggctaaacacccaattcgcgcc
ttaattttagttccaactagagaacttgctgtacaagtgcatgaaagtgtcaaaacgtat
ggaaagtatttgccgctaagatcaacagtaatttatggtggagtcaacatcgatgcacag
atcaatgccgttcgttctggaatagaaattctagtagcaacaccaggtcgtttattggat
cacctacaacaaaagactttgggtttatctaaaatagaaatattcattttagatgaagca
gatagaatgttagatatgggatttatgcctgatataaaacagattattcaactactaccc
gagaaacgccagaatctgatgttttcagctactttctcagaagaaatcaagaaacttgca
agcaaaatcttaaaaaatccggtcttgattgaggttgcaaaacaaaattctgtgagtgaa
ctaattacacatgttgttcatccagtggacactacaagaaagcaggaattattaatttct
ttgattaaacgacagaaattacatcaagtattggtttttacaagaactaaacaaggtgcg
gatcatttaacaaaatggttgaatcacagcgggatatcgagtgcagcaatacacggagat
agaaatcagctccaacgtactcaagccttgactaattttaaacaaagtttgattccggta
cttgttgcaactgatgttgctgcacgtggtcttgatatagaagaattaacgcatgtaatt
aattttgaattacccaataaccctgaagattatgttcatcgaattggacgaacaggccga
gctggaaccaaaggattcgcaatttctttagtaagtcaggaagaaaaaaaactattgatt
gatatagagagggtattaggaattaaagttaggatcgagcaaatagaaggatttgagtta
agaaataagaatccatcgctttcagataatgccacatcaattctgaactcgaaattaaaa
agtaatactttacctcagcaaataaagaaagagctttttgtgaaaaataatagtacagcc
gatcactttaaaaaagaagtgatctctaaacttcgaaatacaaggcgttcagaaaaaatg
gtagacccgctatttacccagccatatgtttctacaggttctgatgtaaaaaatgtaaag
gatgattcaaatgtattaaataaaaaaggaatacacaagaaacattcaaatagaccatta
cccgctttatttatttcacctgtaattggtaaacagaagtaa
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