Nitrosomonas sp. Is79A3: Nit79A3_2363
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Entry
Nit79A3_2363 CDS
T01569
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nii
Nitrosomonas sp. Is79A3
Pathway
nii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nit79A3_2363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nii03019
]
Nit79A3_2363
03400 DNA repair and recombination proteins [BR:
nii03400
]
Nit79A3_2363
Enzymes [BR:
nii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Nit79A3_2363
Messenger RNA biogenesis [BR:
nii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nit79A3_2363
DNA repair and recombination proteins [BR:
nii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Nit79A3_2363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
Motif
Other DBs
NCBI-ProteinID:
AEJ02135
LinkDB
All DBs
Position
complement(2524261..2526060)
Genome browser
AA seq
599 aa
AA seq
DB search
MSKALNILKEVFGYPAFRGQQAEVIAHLANGGDCLVLMPTGGGKSLCYQIPALLRDGVAI
VVSPLIALMQNQVAALHEIGVRAAVLNSSLSQQEAAQVEQNLQAGEYDLLYVAPERLLTA
RFLNLITRIPIALFAIDEAHCVSQWGHDFRPEYSQLSVLHERFSEVPRIALTATADMDTR
KEIIERLGLDVARVFVSSFDRPNIRYQIIDKTNSRSQLLTFIQAEHPGDAGIVYCLSRKK
VEETTACLVDHGMRAVAYHAGMNMQERSLNQEKFLREEGIIMVATIAFGMGIDKPDVRFV
AHLDLPKSIEGYYQETGRAGRDGQAANAWMVYGLGDVIQQRRMIEESQAQLKFKQVAARK
LEAMLSLCETTTCRRARLLSYFGETADTAPCGNCDVCLNPPEVWDATVEVQKALSCVYRT
GQNFGAGHLIDVLRGNLTERVQQWHHDRISTFGIGKDLPERAWRAIFRQIVALGLLTTDS
EGHGALQLIEASRAVLKGQQSVFLRLQTKPERLSGKRQADDLALLDTAERYRWERLRLWR
AKTAKEHGVPAYVIFHDATLHELVRLCPQTEDELRLVTGIGARKLDKYGNHLIEILRGC
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagcgcttaacatactcaaagaagtttttggttaccccgcttttcgcgggcaa
caagcagaagtgattgcacatcttgccaatggcggcgattgtcttgtgctgatgccgacg
ggtggcggcaagtcgctgtgctatcagattcctgccttgttgcgcgacggagtggctatc
gttgtttctccgttaattgcattaatgcaaaatcaggtggctgcactgcatgaaatcggg
gtgcgcgcagcggttctgaattcttcattgtcacagcaggaagccgcccaagtcgagcag
aatcttcaggcgggcgagtatgacttattgtatgttgcgccggaacgtctgctgactgcg
cgttttttgaacctgattacgcgcatcccgattgcattatttgcgattgatgaagcgcat
tgtgtatcgcaatggggacatgatttccgtccggaatacagtcaattgtcagttttgcat
gagcgcttttccgaagtgccgcgtattgctttaacagccacggctgacatggatacccgc
aaagaaattattgagcgcttggggttggatgtggccagagtatttgtttccagctttgat
cgcccgaatatccgttatcaaattatcgataaaaccaatagccgctcgcagttattgacc
ttcatacaagcagaacatccaggcgacgcgggtattgtttattgcctttcccgtaagaaa
gtggaggagacaacagcatgtctggtcgatcatggcatgcgcgcagtagcctatcacgcc
ggtatgaacatgcaagaacgcagcctgaaccaagaaaagtttctgcgcgaagaaggtatc
atcatggttgccaccatcgcgttcggaatggggatcgataagccagatgtgcgttttgtc
gcgcatttggatttgcccaagagcattgaaggttattatcaggaaaccggccgtgccggc
cgtgacggacaggcagccaatgcctggatggtttatggcctcggtgatgtcattcagcaa
cggcgcatgattgaggaatctcaagcgcaattaaaatttaagcaagttgctgcgcggaag
ctggaagccatgttgtcgctgtgcgaaacaacaacttgccgccgcgcacgcctattaagt
tattttggtgaaacggctgatacggcaccttgtggaaactgtgacgtctgtctaaatcca
ccggaagtctgggatgccacggtagaggtgcagaaagcattgtcgtgtgtttaccggacc
ggacagaattttggcgcggggcacttgattgatgtgttgcgaggtaatttgactgaacgt
gtgcagcaatggcatcacgatagaatcagtacgtttggtatcggcaaagatttgcctgag
cgagcttggcgtgcgatattccgtcagattgtagcacttggtttattgacgacggatagt
gagggccatggcgccttgcaactgatcgaagccagccgtgcggtgctgaagggacagcaa
agtgtgttcttacggctgcaaacaaagcctgaacgattgtccgggaagcggcaagctgat
gatttggcgttgctggatacagccgagcgttaccgatgggaacggttgcgcttatggcgg
gcaaaaacagccaaggagcatggtgtgccagcctatgtgatttttcatgatgctaccttg
catgagctagtgcgtttatgcccgcaaacggaagatgaattgcgcctggtaaccggcatc
ggcgcacgcaaactcgataagtacggcaaccatctaatcgagatacttcgcggttgttag
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