Nitrosomonas sp. Is79A3: Nit79A3_2521
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Entry
Nit79A3_2521 CDS
T01569
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nii
Nitrosomonas sp. Is79A3
Brite
KEGG Orthology (KO) [BR:
nii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nii03019
]
Nit79A3_2521
Enzymes [BR:
nii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Nit79A3_2521
Messenger RNA biogenesis [BR:
nii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Nit79A3_2521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
nSTAND3
AAA_22
T2SSE
NACHT
SLFN-g3_helicase
AAA_30
AAA_25
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AEJ02291
UniProt:
F8GF67
LinkDB
All DBs
Position
complement(2690805..2694590)
Genome browser
AA seq
1261 aa
AA seq
DB search
MQLNRNHYKKFSPDDITRRLAHLPCPTYAEDLPVNLRREEIKRAIDSHQVVIVSGETGSG
KTTQIPKICLDLKRGVHGLIGHTQPRRIAARTVAARISAELNSPLGQAVGYKVRFSDKIS
TDSYIKLMTDGILLAETQGDPQLQAYDTLIIDEAHERSLNIDFLLGYISQLLLKRPDLKL
IVTSATIDAQRFSRHFNNAPVIEVTGRLYPVEIFYHPPVAGDEEEGDMQQAILNAVDELI
MLGSGDILVFLPGEREIRETAETLRKHHFDRLRTGISGVEILPLFARLSFAEQERVFQPG
DTRRIVLATNVAETSLTVPGIHYVIDTGWARVNRYSYRNKVEQLLVEKISRASANQRAGR
CGRIANGVCIRLYTELDFQGRVEFTDPEILRSSLATVILRMKSLNIGDVEDFPFLEPPSP
RMITDGYQLLAELGAVDDDRQLTAIGWRLAKFPIDPKIARMILAAKNENCLHEILIITAA
LSLQDPRDRPFDQQVAADNAHRRFQDERSDFLSYLKLWDFFDELLKHKKSTRKLVDQCRE
HFLSYRRLREWREIHGQLHVLISELGLKPNEIPAGYDEIHRALLAGLLGNIGFKTEKEGE
YLGARGIKFAIFPGSVLKKGKAKWVVAAELVETSKLYARCAARIEPIWLERIAGNLCKKH
HFDPHWEKKQAQVVAYERVTLYGLIIVTKRPIHYGPINPKESREIFIRSALVAGEYVTQA
PFFTHNQELIHEIEELEHKARRQDVLVDEQEIFAFYDTIIPEKITNGAGFEKWRKQAEQQ
DSQLLYLKRELLMRHQAGHVTEVQFPESMTLPDGSVLPLTYRFEPTHILDGVTVSVPLPL
LNRLDANQLDYLVPGLIREKVTWYLKALPKQIRRNLVPLPESVTEFLQGTSNALQKGSLR
DALEKFILRKTNLPIPAETWQDKDMPAHLLMNIQVKDDAGQDLAMSRNLAELRMQLGKAA
QMTFVKRDAGNEKISIERDAITQWDFGDLPAEVAFKRNGQQLTGYPALIEQTDSGAIRLF
DTQEAADRAMRLGVRRLLCLALKEQLKQLDKNLPGLKQASLQLSTRMNPGELKQDMLNAI
IDRALLNDDPLPRTESEFAAHHQRAKGRLPEAAAALANLLQQIGSEYQILMGRLTALRNN
TVKAELNEQLDNLIYPGFLSHTSWKRLQQFPRYVKGMALRLEKLSANLERDERNSKEVAA
LWQQYAQRREKHQKIGLIDENLDEFRWQIEELRISLFAQELKTPYPVSSKRLQKLWESVR
A
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
gtgcaattgaatagaaatcactataaaaaattctctcccgacgacatcacaaggcgtctt
gcccatcttccctgcccaacgtatgcggaagatttgccggtcaatcttcgccgggaagaa
attaaacgcgccattgatagccatcaggtcgtgattgtttccggcgagacagggtcgggt
aaaacaacgcaaattcctaaaatctgcctggatctcaagcgcggtgtgcacggattgatc
gggcatacgcaaccgcgtcgcattgccgcgcgtactgtggccgcgcgtatttctgctgag
ctgaatagtccgctgggtcaggcagtcggttataaagtgcggttttcggacaaaataagc
acggattcctatatcaaattgatgacggacggcattctgctggctgagacgcagggtgat
ccgcagttgcaggcttacgatactttgattatcgatgaagctcacgagcgcagtttgaat
attgattttctgctcggttatatcagtcagttattgctgaaacggcctgatctcaagctg
attgtcacttccgccaccatcgacgcgcagcgtttttcccggcatttcaataatgcgccg
gtgattgaagtgaccggcaggctctatccggttgaaatcttttaccacccgccggttgcc
ggcgatgaggaggagggcgatatgcaacaagccatcctcaatgcggttgatgaattgatc
atgctgggctcaggcgatattctggtttttttgcccggcgagcgcgaaatccgggagacc
gccgagacactgcgcaagcatcattttgatcgccttcgaacaggcatttccggcgtggag
atattgccgctgtttgcgcgcttatcctttgccgagcaggaacgggtattccaacccggc
gatacccgccgtattgtattagccaccaatgttgccgaaacgtcattgaccgttcccggt
attcactacgttattgataccggatgggcgcgtgttaaccgctacagttaccgcaacaag
gtcgagcagttgctggtggagaaaatctcgcgtgcatcggcgaatcaaagggcggggcgc
tgcgggcggatagccaacggggtttgtattcgcctgtataccgaattggattttcaaggg
cgcgtcgaatttaccgatccggaaattctgcgttcttcgctggcaaccgttattttgcgc
atgaaatcgctcaacatcggcgatgtggaagattttccgtttctggagccgccatcgccg
cggatgatcaccgatggctatcaattgctggcagagctgggcgctgttgatgacgaccgg
caactcacggcgattggctggcgtttggccaaattcccgattgatcccaaaattgcccgc
atgatattggcggcaaagaatgagaattgcctgcacgaaatactgatcatcacggccgca
ttaagtttgcaagatccgcgcgaccggccatttgatcagcaggtggctgccgataatgcg
caccgccggtttcaggatgagcgctcggattttctgtcttacctgaagctatgggatttc
ttcgatgagttattgaaacataaaaaatcaacccgcaaactggtcgaccaatgccgggag
catttcttatcttaccggcgcttgcgggagtggcgtgagattcatggccaattgcatgta
ttgatcagtgaattaggcttaaaacccaacgaaattcccgccgggtatgatgagattcat
cgcgctttgttggccggattgctcgggaatatcgggtttaaaaccgagaaggaaggggaa
tatctgggcgctcgcggtatcaagttcgcgattttccccggctcggtgctcaaaaaaggc
aaagccaagtgggtcgtcgctgcggaattggtggagaccagtaagctgtatgcgcgatgt
gccgcgaggattgagccgatctggctggaaagaattgcggggaatttatgcaagaaacac
cattttgatccgcattgggaaaagaaacaggcgcaagtggtggcgtatgagcgtgtcacg
ttgtacggcttaatcattgttaccaagcggccgatccactacggcccgatcaatcctaaa
gaatcccgcgagatttttatccgctcggcgctggttgccggggagtacgtcacgcaagcg
cctttcttcacgcacaatcaagaactgattcatgaaatcgaggaactggagcataaagcg
cggcggcaggatgtgctggttgatgagcaagagatttttgctttttacgataccatcatc
ccggaaaaaataaccaacggtgcgggatttgaaaaatggcggaaacaggctgagcaacaa
gattcccagttgctttatctgaaacgtgaattactgatgcgccatcaggccggccatgtc
acggaagttcagtttccggaaagcatgacattgcccgacggcagcgttttgccactcact
taccgctttgaacccacgcatattctcgacggcgtaaccgtttctgtgccgttgccattg
ctcaaccggttggatgccaatcaactggattatctggttcccggtttgattcgtgagaaa
gtgacctggtatttaaaagcattacccaagcagattcgccgcaacctggtcccattgccg
gaatccgtcactgaatttctgcagggaacatcgaacgctttgcaaaagggctcactgcgg
gatgctctagaaaaatttattcttagaaaaaccaacctgccgattcccgcagaaacctgg
caagacaaagacatgccagcgcatctgttgatgaatattcaagtgaaggatgatgcagga
caagatctggccatgagccgcaatctcgccgaactgcgaatgcagctcggcaaagccgca
caaatgacatttgtaaaacgcgatgccggaaacgaaaaaatcagtattgagcgcgatgcc
atcacgcagtgggattttggcgatttgcctgcggaagtggcgtttaaacgcaatggtcag
caactgactggttatccggcgctgatcgaacaaacggacagtggcgctatccggctattt
gatacgcaagaagcggcggatagggcgatgcgcttgggtgtcaggcggctattgtgtttg
gcattgaaagaacagctcaaacagttggataagaatctgccgggactcaaacaagccagc
ttacaattatcgacccggatgaatccgggcgagctgaagcaagacatgctgaacgctatc
attgatcgcgcattgctgaacgatgatccattgccgcgcaccgaatccgaatttgctgca
caccaccaacgcgctaaaggccgcctgcctgaagccgcggccgctctcgccaatttgctg
cagcagattggcagtgaatatcaaatcctgatggggcgattaacagcgcttcgcaacaac
accgtaaaagctgagctcaatgaacagctcgacaatctgatttatcccggatttctcagc
catacatcgtggaaaagattgcagcagttcccgcgctatgtgaaaggcatggccttgcga
ctggagaaactatccgccaacctggaacgcgacgaacgaaatagcaaggaagtggccgca
ctctggcagcaatatgcgcagcgccgggaaaaacatcagaaaatcgggctgattgatgag
aatctcgatgaatttcgctggcagattgaggaactacgcatatcgctttttgcgcaggaa
ttgaagacgccgtacccggtatcgagtaaacgattgcagaaattgtgggagagtgtgcgg
gcataa
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