Nitrosomonas sp. Is79A3: Nit79A3_2907
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Entry
Nit79A3_2907 CDS
T01569
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nii
Nitrosomonas sp. Is79A3
Brite
KEGG Orthology (KO) [BR:
nii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nii03016
]
Nit79A3_2907
Enzymes [BR:
nii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Nit79A3_2907
Transfer RNA biogenesis [BR:
nii03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Nit79A3_2907
Prokaryotic type
tRNA splicing ligases
Nit79A3_2907
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEJ02658
LinkDB
All DBs
Position
3068717..3070144
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AA seq
475 aa
AA seq
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MNSQQLQQLHAYLWTLPKAAGEKRAEVLLYGNQPLLESMDEKVLQQIANVAALPGLAGAA
MTMPDAHWGYGFPIGGVAAFDAEQGGIISAGGVGFDISCGIRCLRSNLNLHDAAPLLRQL
ADRLFATIPAGVGEEGNISLNPHQLDQVLHGGAQWAVKQGYGDAADLEYVEENGRVAGAI
PENVSELAKKRQRGEMGTLGSGNHYLEVQVVEHIYDALTAQAFGLHEGQLIISIHCGSRG
LGHQVGTDYLMMLAKAASRLGIHLPDRELACAPIKSPEGQQYIGAMNAAINCALANRQIL
THLTRATFAEVYPHAALETLFDVSHNTCKEEMHEVDGKSRLLHVHRKGATRAFAPGHPKL
PARYRAAGQPVIIGGSMGTGSYILAGTSSNQAFASCSHGAGRAMSRNQALKQWNGRALIN
DLAQQGILIRTRSMRGAAEEAPGAYKDVDQVAEVTEQAGLARRIAFLRPKVCVKG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtcaacaattacagcagttgcacgcttatctctggacgctccccaaagccgcc
ggtgaaaaacgcgcagaagtattgctttacggtaatcaacctttgctcgaaagcatggat
gaaaaggtattgcagcaaattgccaatgtcgccgcattacctggcttggccggtgcagca
atgacaatgccggacgcgcattgggggtatggatttcccatcggcggcgtggcggcattt
gatgcggaacaaggcggcatcatttcagccggcggtgtcggattcgatatttcctgcggc
atccgctgcctgcgcagcaatctcaatttgcacgacgccgcaccgcttttgcgtcaactg
gcggatagactgttcgcaaccattcctgctggcgtcggtgaagaaggcaatatcagtttg
aatccgcaccagctcgaccaagtactacacggcggcgcgcaatgggctgtgaaacagggt
tatggtgatgcggccgatctggaatatgtggaagaaaatgggcgtgtagccggtgctata
ccggaaaatgtctctgaactggccaaaaagcgccagcgtggtgaaatgggtaccttgggt
tccggcaaccattatctggaagtacaggtagtagagcatatttacgatgcccttactgcg
caagctttcggcttacacgaaggtcagctaatcatttccattcactgcggttcacgggga
ctcgggcatcaagtcggcaccgattatctgatgatgctggccaaggcggcgagtcgcctc
ggcatacacttgcccgaccgggagttagcctgcgcaccgataaaatctccggaaggccag
caatatatcggcgcgatgaatgccgccattaattgcgcactggctaaccggcaaatcctg
acacatttgacccgcgccacgtttgcagaagtttatccgcatgcagcgctggaaacactg
tttgacgtttcgcacaatacttgcaaggaagaaatgcacgaagtggatggcaaatcccga
ttgctgcatgtgcatcgtaaaggtgcaacacgggcgtttgcgccaggacatcccaaactg
ccagcacgttatcgtgcagcgggccaacctgtcatcatcggcggcagcatgggtaccggt
tcgtatattcttgctggcaccagcagcaatcaggcttttgcctcatgcagccacggcgca
ggccgcgcgatgagccggaaccaagcattgaagcaatggaatggccgtgcattgatcaat
gatctagcgcaacaaggtatactaattcgcactcgctcaatgcgcggcgcagcggaagaa
gcgccgggcgcttataaggatgtcgaccaagtggccgaggttacggaacaagcaggattg
gcgcgccggattgcctttctgcgcccgaaagtatgtgttaaaggatag
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